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The map label for this gene is ybiR [H]

Identifier: 218688602

GI number: 218688602

Start: 812128

End: 813246

Strand: Direct

Name: ybiR [H]

Synonym: ECED1_0783

Alternate gene names: 218688602

Gene position: 812128-813246 (Clockwise)

Preceding gene: 218688601

Following gene: 218688604

Centisome position: 15.59

GC content: 51.39

Gene sequence:

>1119_bases
ATGAGCCTGCCTTTTTTACGCACGCTGCAAGGCGATCGTTTTTTTCAGTTATTAATTCTTGTTGGCATCGGATTAAGTTT
TTTCGTTCCCTTTGCACCGAAATCCTGGCCTGCTGCTATCGACTGGCACACCATCATCACCTTAAGCGGCCTGATGCTGC
TGACCAAAGGTGTCGAGTTAAGCGGTTATTTTGATGTGCTGGGGCGCAAAATGGTGCGCCGTTTTGCTACGGAGCATCGG
CTGGCGATGTTTATGGTACTGGCGGCAGCGCTGCTTTCTACCTTTCTGACCAACGATGTCGCACTGTTTATAGTTGTTCC
GCTGACTATCACGCTAAAAAGACTGTGTGAGATTCCGGTTAATCGGCTGATTATTTTTGAGGCGCTGGCAGTCAACGCTG
GTTCGCTACTGACGCCAATTGGCAACCCGCAAAATATTCTTATCTGGGGACGTTCTGGTCTTTCGTTTGCCGGATTTATT
GCCCAAATGGCACCGCTGGCTGGCGCAATGATGCTGACACTCCTGCTGTTGTGCTGGTGTTGTTTCCCTGGAAAGGCGCT
GCAATACCATACGGGGGTGCAAACGCCGGAGTGGAAACCGCGGCTGGTGTGGAGTTGTCTGGGGCTGTATATCGTCTTTC
TGACGGCGCTGGAGTTAAAACAAGAGCTGTGGGGACTGGTGATTGTGGCGGCGGGCTTTGCGCTGCTGGCGCGTCGTGTG
GTGCTCAGTGTGGACTGGACGCTGCTGCTGGTGTTTATGGCGATGTTTATCGACGTCCATTTACTAACCCAACTGCCAGT
TTTGCAGGGGGTGTTAAGTAACGTGAGTCATTTATCCGAACCCGGATTATGGTTAACGGCGATCGGTTTATCGCAGGTGA
TCAGTAACGTGCCGAGTACCATTTTGCTGCTCAATTATGTGCCACCGTCTTTATTACTGGCATGGGCGGTAAACGTGGGG
GGCTTTGGTTTATTACCCGGATCGCTGGCAAATTTGATTGCGTTACGGATGGCGAACGATCGCCGTATCTGGTGGCGTTT
TCATCTTTATTCGATACCGATGCTGTTGTGGGCGGCGCTGGTGGGATATGTTTTGTTGGTTATGATCCCGGCGGGATAA

Upstream 100 bases:

>100_bases
GTCCGGAAATCGCCCGTCGCGACGCGGAAGGTATGGAGCACCATGTTAGTGAAGAGACGCTGGATGCCTTTCGTTTGTTT
ACCCAGAAACACGGTGCCAA

Downstream 100 bases:

>100_bases
GGTCTGTCAAATTAAAAAGGCGGATTATGAGTCCGCCTTTGCTTTACGTTTTGAAGATTAATTCAGACGAACCGGCATCC
CGGAACGATTTTTGATCGCT

Product: putative transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 371

Protein sequence:

>372_residues
MSLPFLRTLQGDRFFQLLILVGIGLSFFVPFAPKSWPAAIDWHTIITLSGLMLLTKGVELSGYFDVLGRKMVRRFATEHR
LAMFMVLAAALLSTFLTNDVALFIVVPLTITLKRLCEIPVNRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFI
AQMAPLAGAMMLTLLLLCWCCFPGKALQYHTGVQTPEWKPRLVWSCLGLYIVFLTALELKQELWGLVIVAAGFALLARRV
VLSVDWTLLLVFMAMFIDVHLLTQLPVLQGVLSNVSHLSEPGLWLTAIGLSQVISNVPSTILLLNYVPPSLLLAWAVNVG
GFGLLPGSLANLIALRMANDRRIWWRFHLYSIPMLLWAALVGYVLLVMIPAG

Sequences:

>Translated_372_residues
MSLPFLRTLQGDRFFQLLILVGIGLSFFVPFAPKSWPAAIDWHTIITLSGLMLLTKGVELSGYFDVLGRKMVRRFATEHR
LAMFMVLAAALLSTFLTNDVALFIVVPLTITLKRLCEIPVNRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFI
AQMAPLAGAMMLTLLLLCWCCFPGKALQYHTGVQTPEWKPRLVWSCLGLYIVFLTALELKQELWGLVIVAAGFALLARRV
VLSVDWTLLLVFMAMFIDVHLLTQLPVLQGVLSNVSHLSEPGLWLTAIGLSQVISNVPSTILLLNYVPPSLLLAWAVNVG
GFGLLPGSLANLIALRMANDRRIWWRFHLYSIPMLLWAALVGYVLLVMIPAG
>Mature_371_residues
SLPFLRTLQGDRFFQLLILVGIGLSFFVPFAPKSWPAAIDWHTIITLSGLMLLTKGVELSGYFDVLGRKMVRRFATEHRL
AMFMVLAAALLSTFLTNDVALFIVVPLTITLKRLCEIPVNRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFIA
QMAPLAGAMMLTLLLLCWCCFPGKALQYHTGVQTPEWKPRLVWSCLGLYIVFLTALELKQELWGLVIVAAGFALLARRVV
LSVDWTLLLVFMAMFIDVHLLTQLPVLQGVLSNVSHLSEPGLWLTAIGLSQVISNVPSTILLLNYVPPSLLLAWAVNVGG
FGLLPGSLANLIALRMANDRRIWWRFHLYSIPMLLWAALVGYVLLVMIPAG

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Escherichia coli, GI1787039, Length=372, Percent_Identity=97.5806451612903, Blast_Score=691, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 41089; Mature: 40958

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPFLRTLQGDRFFQLLILVGIGLSFFVPFAPKSWPAAIDWHTIITLSGLMLLTKGVEL
CCCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
SGYFDVLGRKMVRRFATEHRLAMFMVLAAALLSTFLTNDVALFIVVPLTITLKRLCEIPV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCH
NRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFIAQMAPLAGAMMLTLLLLCWC
HHHHHHHHHHHCCCCEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
CFPGKALQYHTGVQTPEWKPRLVWSCLGLYIVFLTALELKQELWGLVIVAAGFALLARRV
CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLSVDWTLLLVFMAMFIDVHLLTQLPVLQGVLSNVSHLSEPGLWLTAIGLSQVISNVPST
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCCCC
ILLLNYVPPSLLLAWAVNVGGFGLLPGSLANLIALRMANDRRIWWRFHLYSIPMLLWAAL
EEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHH
VGYVLLVMIPAG
HHHHHHHHCCCC
>Mature Secondary Structure 
SLPFLRTLQGDRFFQLLILVGIGLSFFVPFAPKSWPAAIDWHTIITLSGLMLLTKGVEL
CCCCHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
SGYFDVLGRKMVRRFATEHRLAMFMVLAAALLSTFLTNDVALFIVVPLTITLKRLCEIPV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCH
NRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFIAQMAPLAGAMMLTLLLLCWC
HHHHHHHHHHHCCCCEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
CFPGKALQYHTGVQTPEWKPRLVWSCLGLYIVFLTALELKQELWGLVIVAAGFALLARRV
CCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLSVDWTLLLVFMAMFIDVHLLTQLPVLQGVLSNVSHLSEPGLWLTAIGLSQVISNVPST
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCCCC
ILLLNYVPPSLLLAWAVNVGGFGLLPGSLANLIALRMANDRRIWWRFHLYSIPMLLWAAL
EEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHH
VGYVLLVMIPAG
HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]