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The map label for this gene is ybgJ [H]

Identifier: 218688508

GI number: 218688508

Start: 711531

End: 712187

Strand: Direct

Name: ybgJ [H]

Synonym: ECED1_0683

Alternate gene names: 218688508

Gene position: 711531-712187 (Clockwise)

Preceding gene: 218688507

Following gene: 218688509

Centisome position: 13.66

GC content: 57.08

Gene sequence:

>657_bases
GTGCAACGAGCGCGTTGTTATCTGATAGGTGAAACGGCGGTAGTACTGGAACTGGAACCGCCGGTGACGCTGGCTAGCCA
GAAACGGATCTGGCGACTGGCACAGCGTCTGGTGGATATGCCGAATGTGGTTGAAGCCATTCCTGGCATGAACAATATCA
CAGTGATTTTGCGTAATCCTGAGTCGCTGGCGCTGGATGCCATAGAGCGTTTGCAACGCTGGTGGGAGGAGAGTGAGGCG
CTGGAGCCGGAGTCTCGCTTTATTGAAATTCCGGTGGTTTACGGTGGCGCAGCCGGACCGGATTTGGCGGTGGTCGCGGC
GCATTGTGGATTGAGCGAAAAACAGGTTGTTGAATTGCACTCCTCCGTGGAATACGTGGTCTGGTTTTTAGGTTTTCAAC
CGGGCTTCCCGTATCTCGGGAGTTTGCCGGAACAACTACACACGCCACGGCGCGCTGAACCGCGCTTGCACGTTCCGGCA
GGTTCTGTCGGGATCGGCGGGCCGCAGACCGGTGTTTATCCGCTGGCAACGCCGGGTGGCTGGCAGTTGATTGGTCATAC
CTCACTCAGCCTGTTTGATCCGGAGCGTGACGAACCCATCTTATTACGTCCGGGAGACAGCGTGCGCTTTGTACCCCAGA
AGGAGGGAGTATGCTGA

Upstream 100 bases:

>100_bases
ATTCGCGCATTGAGCGAGTGGCTGAATGAAAATACCGATCTTGATGTGACCTTTATTGATATTCCTAATCCTGCATAACG
AATAATCAGAGGGATCGAAA

Downstream 100 bases:

>100_bases
AGATTATTCGTGCGGGCATGTATACCACTGTGCAGGATGGCGGTCGTCACGGTTTTCGCCAGTCGGGTATCAGCCACTGC
GGCGCACTGGATATGCCTGC

Product: putative hydrolase subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNPESLALDAIERLQRWWEESEA
LEPESRFIEIPVVYGGAAGPDLAVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLHVPA
GSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPERDEPILLRPGDSVRFVPQKEGVC

Sequences:

>Translated_218_residues
MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNPESLALDAIERLQRWWEESEA
LEPESRFIEIPVVYGGAAGPDLAVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLHVPA
GSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPERDEPILLRPGDSVRFVPQKEGVC
>Mature_218_residues
MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNPESLALDAIERLQRWWEESEA
LEPESRFIEIPVVYGGAAGPDLAVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLHVPA
GSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPERDEPILLRPGDSVRFVPQKEGVC

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786929, Length=218, Percent_Identity=98.6238532110092, Blast_Score=431, Evalue=1e-122,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02682 AHS1 [H]

EC number: NA

Molecular weight: Translated: 24043; Mature: 24043

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNP
CCCCEEEEEECEEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEEECC
ESLALDAIERLQRWWEESEALEPESRFIEIPVVYGGAAGPDLAVVAAHCGLSEKQVVELH
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHH
SSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLHVPAGSVGIGGPQTGVYPLATPGG
HHHEEEEEEEECCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCC
WQLIGHTSLSLFDPERDEPILLRPGDSVRFVPQKEGVC
EEEEECCEEEEECCCCCCEEEEECCCCEEEECCCCCCC
>Mature Secondary Structure
MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVEAIPGMNNITVILRNP
CCCCEEEEEECEEEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEEECC
ESLALDAIERLQRWWEESEALEPESRFIEIPVVYGGAAGPDLAVVAAHCGLSEKQVVELH
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHH
SSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLHVPAGSVGIGGPQTGVYPLATPGG
HHHEEEEEEEECCCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCCCEEEEECCCC
WQLIGHTSLSLFDPERDEPILLRPGDSVRFVPQKEGVC
EEEEECCEEEEECCCCCCEEEEECCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]