Click here to switch to the map view.

The map label for this gene is hcpA [H]

Identifier: 218688087

GI number: 218688087

Start: 243407

End: 243907

Strand: Reverse

Name: hcpA [H]

Synonym: ECED1_0222

Alternate gene names: 218688087

Gene position: 243907-243407 (Counterclockwise)

Preceding gene: 218688088

Following gene: 218688084

Centisome position: 4.68

GC content: 49.9

Gene sequence:

>501_bases
TTGAGATTAAGGAGAATAACAATGGCAAATCCCGTCTATCTGACACTGAACGGAGAACTTCAGGGGCTGATTTCATCCGG
ATGCTCGTCAATGCCGTCCATCGGTAACAAAGCCCAGATTGCACATCAGGATCAGATCATGGTGACGTCACTGTCCCATG
GTCTGAGCCGTGCGCAGAATGTCAACCATCAGGAGTTGACCATCACGAAACCGGTGGACAAATCCTCCCCTCTGCTGGGC
AAGGCCATTTCAGAGAATGAATGTCTGACCTGTGATTTTGTATTCTACCGCACCAACCGCTTTGGAATTAATGAACCGTA
CTACAAGCTGAAACTGGCTAACGCCCGGCTCTCAAACATCGGCCTTACCGTTCCCCATACCATTAACGACAGTCCTGGGC
AGGCGGAAGAGTCTGTGTCATTTACCTATGAGAGCATCAATTGGGAGCACAGCGTCGCCGGAACCAGTGCATACAGCCTT
TGGAGTGAACGGATTTTCTAA

Upstream 100 bases:

>100_bases
ACGAACGGCTGGACGGGCTGTTAAGCCGCTGGCTGCTGCTGAAAAATACCGGACAGGATATGGCAACGGATAACAGAACC
GAACCTGTCCATCCAACTCA

Downstream 100 bases:

>100_bases
GTTACCAGGGAGTCTTTCATCTGCATTATTGTTATATTTTAAAAAGGCAATTTAACATTATAGGATAAAATGACAAAGTA
CGGTTAATCACGAATAAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: Secreted protein hcp [H]

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MRLRRITMANPVYLTLNGELQGLISSGCSSMPSIGNKAQIAHQDQIMVTSLSHGLSRAQNVNHQELTITKPVDKSSPLLG
KAISENECLTCDFVFYRTNRFGINEPYYKLKLANARLSNIGLTVPHTINDSPGQAEESVSFTYESINWEHSVAGTSAYSL
WSERIF

Sequences:

>Translated_166_residues
MRLRRITMANPVYLTLNGELQGLISSGCSSMPSIGNKAQIAHQDQIMVTSLSHGLSRAQNVNHQELTITKPVDKSSPLLG
KAISENECLTCDFVFYRTNRFGINEPYYKLKLANARLSNIGLTVPHTINDSPGQAEESVSFTYESINWEHSVAGTSAYSL
WSERIF
>Mature_166_residues
MRLRRITMANPVYLTLNGELQGLISSGCSSMPSIGNKAQIAHQDQIMVTSLSHGLSRAQNVNHQELTITKPVDKSSPLLG
KAISENECLTCDFVFYRTNRFGINEPYYKLKLANARLSNIGLTVPHTINDSPGQAEESVSFTYESINWEHSVAGTSAYSL
WSERIF

Specific function: Unknown

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

Organism=Escherichia coli, GI1789850, Length=149, Percent_Identity=38.9261744966443, Blast_Score=95, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 18438; Mature: 18438

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLRRITMANPVYLTLNGELQGLISSGCSSMPSIGNKAQIAHQDQIMVTSLSHGLSRAQN
CCEEEEEECCCEEEEECCCCHHHHHCCCCCCCCCCCCCEECCCCEEEEEHHHHHHHHHHC
VNHQELTITKPVDKSSPLLGKAISENECLTCDFVFYRTNRFGINEPYYKLKLANARLSNI
CCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEECCCEECCC
GLTVPHTINDSPGQAEESVSFTYESINWEHSVAGTSAYSLWSERIF
CEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MRLRRITMANPVYLTLNGELQGLISSGCSSMPSIGNKAQIAHQDQIMVTSLSHGLSRAQN
CCEEEEEECCCEEEEECCCCHHHHHCCCCCCCCCCCCCEECCCCEEEEEHHHHHHHHHHC
VNHQELTITKPVDKSSPLLGKAISENECLTCDFVFYRTNRFGINEPYYKLKLANARLSNI
CCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCEEEEEECCCEECCC
GLTVPHTINDSPGQAEESVSFTYESINWEHSVAGTSAYSLWSERIF
CEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]