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The map label for this gene is lomR [H]

Identifier: 218551670

GI number: 218551670

Start: 4550415

End: 4551014

Strand: Direct

Name: lomR [H]

Synonym: EFER_4464

Alternate gene names: 218551670

Gene position: 4550415-4551014 (Clockwise)

Preceding gene: 218551669

Following gene: 218551671

Centisome position: 99.17

GC content: 51.0

Gene sequence:

>600_bases
ATGCGTAAAGTATGTGCAATTCTTTTGTCCGCAGCAGTATTCCTGACCGTATCGGGTACGACAGTGAGTGCAGCAGAACA
CCATAGCACATTAAGCGCAGGATATATTCATGCTCATACGAAAATGCCAGGCGGTGATGATCTGAATGGTATTAACGTGA
AATACCGTTATGAATTTACGGACACGCTTGGGATGGTGACGTCATTCAGTTATGCCAACGCCGAAGATGAGCAAAAAACG
CATTACAGCGATACCCGCTGGCATGAAGATTCCGTTCGTAACCGCTGGTTCAGCGTGATGGCGGGGCCGTCTGTACGCGT
GAATGAATGGTTCAGCGCATATGCGATGGCGGGTGTGGCTTACAGCCGTGTTTCGACTTTCTCCGGGGATTATCTCCGCG
TAACTGACAACAAGGGGAAAACGCACGATGTGCTGACCGGAAGTGATGATGGTCGCCACAGTAACACGTCTCTGACGTGG
GGGGCTGGCGTGCAGTTTAACCCGACCGAATCCGTGGCCATTGATATTGCTTATGAAGGCTCCGGCAGTGGTGACTGGCG
CACTGACGGTTTCATCGTGGGTGTCGGTTATAAATTCTGA

Upstream 100 bases:

>100_bases
AAAAAATCCACAGCTGGTATCAGTATCAGCTGAATGTTTAAAACCCAAACCGGGCGCCAGAAATGGCGCCTTTTTTATTG
CAGAAAAGTGAGAGGTAATT

Downstream 100 bases:

>100_bases
TTAGCCAGGTAACACAGTGTTATGACAGCCCGCCGGTTCAGGCGGGCTTTTTTGTGGGGTGAATATGGCAGTAAAGATTT
CAGGTGTACTGAAAGACGGA

Product: Lom-like outer membrane protein of prophage

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MRKVCAILLSAAVFLTVSGTTVSAAEHHSTLSAGYIHAHTKMPGGDDLNGINVKYRYEFTDTLGMVTSFSYANAEDEQKT
HYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLTW
GAGVQFNPTESVAIDIAYEGSGSGDWRTDGFIVGVGYKF

Sequences:

>Translated_199_residues
MRKVCAILLSAAVFLTVSGTTVSAAEHHSTLSAGYIHAHTKMPGGDDLNGINVKYRYEFTDTLGMVTSFSYANAEDEQKT
HYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLTW
GAGVQFNPTESVAIDIAYEGSGSGDWRTDGFIVGVGYKF
>Mature_199_residues
MRKVCAILLSAAVFLTVSGTTVSAAEHHSTLSAGYIHAHTKMPGGDDLNGINVKYRYEFTDTLGMVTSFSYANAEDEQKT
HYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLTW
GAGVQFNPTESVAIDIAYEGSGSGDWRTDGFIVGVGYKF

Specific function: Unknown

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ail/ompX/pagC/lom family [H]

Homologues:

Organism=Escherichia coli, GI1787034, Length=202, Percent_Identity=33.6633663366337, Blast_Score=98, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000758
- InterPro:   IPR011250 [H]

Pfam domain/function: PF06316 Ail_Lom [H]

EC number: NA

Molecular weight: Translated: 21805; Mature: 21805

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS00694 ENT_VIR_OMP_1 ; PS00695 ENT_VIR_OMP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKVCAILLSAAVFLTVSGTTVSAAEHHSTLSAGYIHAHTKMPGGDDLNGINVKYRYEFT
CHHHHHHHHHHEEEEEECCCEEECHHCCCCEECCEEEEECCCCCCCCCCCCEEEEEEEEC
DTLGMVTSFSYANAEDEQKTHYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVA
CHHHHHEECCCCCCCCCHHCCCCCCCCCHHHHHHHEEEEECCCCEEHHHHHHHHHHHHHH
YSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLTWGAGVQFNPTESVAIDIAYEG
HHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCEEECCCCCEEEEEEEEC
SGSGDWRTDGFIVGVGYKF
CCCCCCCCCCEEEEEECCC
>Mature Secondary Structure
MRKVCAILLSAAVFLTVSGTTVSAAEHHSTLSAGYIHAHTKMPGGDDLNGINVKYRYEFT
CHHHHHHHHHHEEEEEECCCEEECHHCCCCEECCEEEEECCCCCCCCCCCCEEEEEEEEC
DTLGMVTSFSYANAEDEQKTHYSDTRWHEDSVRNRWFSVMAGPSVRVNEWFSAYAMAGVA
CHHHHHEECCCCCCCCCHHCCCCCCCCCHHHHHHHEEEEECCCCEEHHHHHHHHHHHHHH
YSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLTWGAGVQFNPTESVAIDIAYEG
HHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCEEECCCCCEEEEEEEEC
SGSGDWRTDGFIVGVGYKF
CCCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]