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The map label for this gene is cspB [H]

Identifier: 218551643

GI number: 218551643

Start: 4526376

End: 4526591

Strand: Direct

Name: cspB [H]

Synonym: EFER_4436

Alternate gene names: 218551643

Gene position: 4526376-4526591 (Clockwise)

Preceding gene: 218551641

Following gene: 218551644

Centisome position: 98.64

GC content: 34.72

Gene sequence:

>216_bases
ATGTCAAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCTGATAAAGGTTTTGGCTTTATTTCTCCTGTTGATGGTAG
TAAAGATGTGTTTGTGCATTTTTCTGCGATTCAGAATGATAATTTTCGAACCTTATTTGAAGGTCAAAAGGTTACCTTCT
CTGTAGAGAGTGGTGCTAAAGGTCCTGCAGCAGCAAATGTCATAATTACTGATTAA

Upstream 100 bases:

>100_bases
TTATTCACTTATTCCTTCTTTGAGTCTCTCCAATTAAGTACGAAGTCGTTTCTGTTATACAAGCCATTTATGCCGAAAGG
CTCAAGTTAAGGAATGTAGA

Downstream 100 bases:

>100_bases
AATTCATAGTTTGTCTGTATACGATAACGAAGAAGGCTGATGCCTGAGTGGAGATACAGACAGAGTGGTGAATATTGGAT
CTCTTTAATAAATAGTAAGG

Product: cold shock protein; Qin prophage

Products: NA

Alternate protein names: CSP-B [H]

Number of amino acids: Translated: 71; Mature: 70

Protein sequence:

>71_residues
MSNKMTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNFRTLFEGQKVTFSVESGAKGPAAANVIITD

Sequences:

>Translated_71_residues
MSNKMTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNFRTLFEGQKVTFSVESGAKGPAAANVIITD
>Mature_70_residues
SNKMTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNFRTLFEGQKVTFSVESGAKGPAAANVIITD

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586882, Length=75, Percent_Identity=44, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI224586884, Length=75, Percent_Identity=44, Blast_Score=62, Evalue=8e-11,
Organism=Escherichia coli, GI1787839, Length=71, Percent_Identity=97.1830985915493, Blast_Score=144, Evalue=2e-36,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=80.5970149253731, Blast_Score=116, Evalue=3e-28,
Organism=Escherichia coli, GI2367114, Length=68, Percent_Identity=79.4117647058823, Blast_Score=115, Evalue=4e-28,
Organism=Escherichia coli, GI1787834, Length=68, Percent_Identity=72.0588235294118, Blast_Score=107, Evalue=2e-25,
Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=69.6969696969697, Blast_Score=98, Evalue=1e-22,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=68.75, Blast_Score=95, Evalue=1e-21,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=53.2258064516129, Blast_Score=72, Evalue=9e-15,
Organism=Escherichia coli, GI2367112, Length=70, Percent_Identity=47.1428571428571, Blast_Score=65, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24663131, Length=71, Percent_Identity=47.887323943662, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7687; Mature: 7556

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKMTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNFRTLFEGQKVTFSVESGAK
CCCCCCEEEEEECCCCCCEEEECCCCCCEEEEEEEEECCCCEEEEECCCEEEEEECCCCC
GPAAANVIITD
CCCEEEEEEEC
>Mature Secondary Structure 
SNKMTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNFRTLFEGQKVTFSVESGAK
CCCCCEEEEEECCCCCCEEEECCCCCCEEEEEEEEECCCCEEEEECCCEEEEEECCCCC
GPAAANVIITD
CCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8022261; 9439003; 9097039; 9278503 [H]