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The map label for this gene is yjjQ [H]

Identifier: 218551615

GI number: 218551615

Start: 4505956

End: 4506681

Strand: Direct

Name: yjjQ [H]

Synonym: EFER_4405

Alternate gene names: 218551615

Gene position: 4505956-4506681 (Clockwise)

Preceding gene: 218551614

Following gene: 218551616

Centisome position: 98.2

GC content: 43.94

Gene sequence:

>726_bases
ATGTTGCCAGGATGCTGCACAAATGGAATTATTATCAGCAAAATACCTGTTATTCAAAGCGGGTTAAAAGGAATAATGAA
CACTCATTTTCCTGATTGTGATCTCTCATTCAGTTCAACGCCAGAAGAAGTCACGTTGTTACAACTGCGTCGTTCAGATA
TCGCCATCGCAGATTTAACGGGTGAATGTAAAAATCCCCGGGTCATTTGCGAACAATTTTATACCTTAATTTCACAATAT
CGCGAGATCCACTGGATATTTCTGGTATCACGCTCTTATTACGCGCAGGCGGTCGAGTTTCTGATGTGTCCGACTGCGAC
GCTGCTATCGGATGTTGAACCTATCGATAGCCTGGTCAAAACCATTCGTACCGGTAATCTCCGTGGCGACAGAATCAGCA
AAGCGTTGCTTTCTCCGGTTATTGACGAACCTCATGATTACAGTTTCCGTCCCGTTATTTTAACGCTCTCAGAGCGGAAG
GTATTAAGGCTCCTTGGAAAAGGTTGGGGAATCAATCAGATCGCCTCCTTATTAAAGAAGAGTAATAAAACCATTAGCGC
CCAGAAAAACAGCGCCATGCGTCGATTAGCAATTCATAGTAATGCTGAAATGTACGCATGGATCAATAGTTCTCAGGGAG
CCAGAGAGCTGAACTTGCCTTCAGTCTACGGAGAAGCCACGGAATGGAAATCAACAGGAATTCAAAGAGAAATGTCGCAC
TTGTAG

Upstream 100 bases:

>100_bases
AATTATTCACGGAGTCTATTAATTCATTATTTCCATCATTTTGATGTATATATTTATGGAACATGATTAACGACAAAACC
AGTGAGACCAGGGAGGAAAT

Downstream 100 bases:

>100_bases
AAAAGTGTGTCATGAGCAGTGTGGGTATTAAAAGTTTATTTGATACTTTCCCTGGTTATCCTTACAGGTTATATACCTAC
TCGACACAAGATGCTTTTCG

Product: DNA-binding transcriptional regulator YjjQ12

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MLPGCCTNGIIISKIPVIQSGLKGIMNTHFPDCDLSFSSTPEEVTLLQLRRSDIAIADLTGECKNPRVICEQFYTLISQY
REIHWIFLVSRSYYAQAVEFLMCPTATLLSDVEPIDSLVKTIRTGNLRGDRISKALLSPVIDEPHDYSFRPVILTLSERK
VLRLLGKGWGINQIASLLKKSNKTISAQKNSAMRRLAIHSNAEMYAWINSSQGARELNLPSVYGEATEWKSTGIQREMSH
L

Sequences:

>Translated_241_residues
MLPGCCTNGIIISKIPVIQSGLKGIMNTHFPDCDLSFSSTPEEVTLLQLRRSDIAIADLTGECKNPRVICEQFYTLISQY
REIHWIFLVSRSYYAQAVEFLMCPTATLLSDVEPIDSLVKTIRTGNLRGDRISKALLSPVIDEPHDYSFRPVILTLSERK
VLRLLGKGWGINQIASLLKKSNKTISAQKNSAMRRLAIHSNAEMYAWINSSQGARELNLPSVYGEATEWKSTGIQREMSH
L
>Mature_241_residues
MLPGCCTNGIIISKIPVIQSGLKGIMNTHFPDCDLSFSSTPEEVTLLQLRRSDIAIADLTGECKNPRVICEQFYTLISQY
REIHWIFLVSRSYYAQAVEFLMCPTATLLSDVEPIDSLVKTIRTGNLRGDRISKALLSPVIDEPHDYSFRPVILTLSERK
VLRLLGKGWGINQIASLLKKSNKTISAQKNSAMRRLAIHSNAEMYAWINSSQGARELNLPSVYGEATEWKSTGIQREMSH
L

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790827, Length=240, Percent_Identity=74.1666666666667, Blast_Score=390, Evalue=1e-110,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 27045; Mature: 27045

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPGCCTNGIIISKIPVIQSGLKGIMNTHFPDCDLSFSSTPEEVTLLQLRRSDIAIADLT
CCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECC
GECKNPRVICEQFYTLISQYREIHWIFLVSRSYYAQAVEFLMCPTATLLSDVEPIDSLVK
CCCCCCHHHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHHHHCCHHHHHHCHHHHHHHHH
TIRTGNLRGDRISKALLSPVIDEPHDYSFRPVILTLSERKVLRLLGKGWGINQIASLLKK
HHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHCCCCHHHHHHHHHH
SNKTISAQKNSAMRRLAIHSNAEMYAWINSSQGARELNLPSVYGEATEWKSTGIQREMSH
CCCEEEHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHCCCHHHHHHCHHHHHHC
L
C
>Mature Secondary Structure
MLPGCCTNGIIISKIPVIQSGLKGIMNTHFPDCDLSFSSTPEEVTLLQLRRSDIAIADLT
CCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEECC
GECKNPRVICEQFYTLISQYREIHWIFLVSRSYYAQAVEFLMCPTATLLSDVEPIDSLVK
CCCCCCHHHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHHHHCCHHHHHHCHHHHHHHHH
TIRTGNLRGDRISKALLSPVIDEPHDYSFRPVILTLSERKVLRLLGKGWGINQIASLLKK
HHHCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHCCCCHHHHHHHHHH
SNKTISAQKNSAMRRLAIHSNAEMYAWINSSQGARELNLPSVYGEATEWKSTGIQREMSH
CCCEEEHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHCCCHHHHHHCHHHHHHC
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]