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The map label for this gene is ydiP [C]

Identifier: 218551614

GI number: 218551614

Start: 4504785

End: 4505738

Strand: Direct

Name: ydiP [C]

Synonym: EFER_4404

Alternate gene names: 218551614

Gene position: 4504785-4505738 (Clockwise)

Preceding gene: 218551613

Following gene: 218551615

Centisome position: 98.17

GC content: 44.86

Gene sequence:

>954_bases
TTGCCGAGAACTATGTCGGTTTACCCTTTGAAAATGTTGGATAAAAAAGAAAATATGCAAAGTGTGGCAACAGTTCCGGT
TTTTAAGCTCTATGGCGAACGGCAAGGCTGGCCCACACCTGAGCTGCTGCATTGTGAATCTATTCATCAACGCAGCAGTC
AGTATGAGTGGCATATTCGCGTGCATCAACATGCGGAACTGGTGCAGTTGCTCTATCTTCATCATGGGCAAGCGGAAATT
GAAATTGAAGGTAAAACTACGGTCATGCAAGAGGCTTGCCTGCAAGTCGTTCCCGCATTATGCGTACATGGTTTTCGCTT
TTCACCTGGCACTGAGGGTTATGTTCTCTCACTGGCCCTGCCACTGTTAAGTCATATGGAATCGCAATTTCCACGCCCGC
TTTCGTTGTTAAACACTGCACAATGTTTTCCGGTCGGGCGGTCTCACGAGTACATCCGTACATTATTTGCGGCGTTACAA
CAGGAATATCATGAAGATAATGATGCCCGGGAAATGATGATGTTCTCTCTGTTGAGTGCACTGTTGGTATGGTTAACCAG
GCAGGAACAGCCTCTTCGGCCACGTTCAGGGAGCAGTGAACGTAAGCGCAGTGTGATGTGCTTGTTCGCAAGGCAAATCG
AAAGCCAGTATCGGGAACATTTACCGTTAAAAGAATATGCCCGGCGGACTGGTGTCTCGGTTACGCATTTAAATCAATTA
TGTCGTGAATTTCATAACTGTAGTGCATTAATGGTATTACACGAACGGTTGATTCTGGAGGCTAAACGCTGTCTGCAATA
CACCCAAATGACCATCAGCCAAATCGCAGATTATTTGGGTTTTAGCGATGTTGCTTATTTCTCGCGATTTTTTAAACGTC
ACACGTTGCTGTCACCTAAAGCATATCGTGGAATTATGAATAATTCAGATGACATTAGTGAAACTAACAATTGA

Upstream 100 bases:

>100_bases
CATCTTCTGCATGACTTTCAGGACAAAAGTGAATTTGATCGCAAAATGCAGGAAGCAGATCGCCATTACTACCTGGAATC
CGTTGCCGGACTGACCACTA

Downstream 100 bases:

>100_bases
ATTAAGTTATTTTAAATGTGTTAGCGCTATAGCATAAGGTATTATGTGATACTACTCTCTTGATTTATACAATGAGGATT
GTAGTATTATCGACGAGTAA

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Transcriptional Regulator PobR; Transcriptional Regulatory Protein; Regulator Of 4HPA-Hydroxylase Operon; Helix-Turn-Helix- Domain Containing Protein AraC Type; PobR Regulator; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Arac Family; Transcriptional Regulator Pobr Arac Family Protein; AraC Family Regulatory Protein; AraC Family Transcriptional Regulatory Protein; Transcriptional Regulatory Protein AraC-Type; AraC-Family Transcriptional Regulator; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein; Helix-Turn-Helix AraC Type; Regulator Of 4hpa-Hydroxylase Operon; Transcriptional Regulator Protein; AraC Family Transcription Regulator Protein

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MPRTMSVYPLKMLDKKENMQSVATVPVFKLYGERQGWPTPELLHCESIHQRSSQYEWHIRVHQHAELVQLLYLHHGQAEI
EIEGKTTVMQEACLQVVPALCVHGFRFSPGTEGYVLSLALPLLSHMESQFPRPLSLLNTAQCFPVGRSHEYIRTLFAALQ
QEYHEDNDAREMMMFSLLSALLVWLTRQEQPLRPRSGSSERKRSVMCLFARQIESQYREHLPLKEYARRTGVSVTHLNQL
CREFHNCSALMVLHERLILEAKRCLQYTQMTISQIADYLGFSDVAYFSRFFKRHTLLSPKAYRGIMNNSDDISETNN

Sequences:

>Translated_317_residues
MPRTMSVYPLKMLDKKENMQSVATVPVFKLYGERQGWPTPELLHCESIHQRSSQYEWHIRVHQHAELVQLLYLHHGQAEI
EIEGKTTVMQEACLQVVPALCVHGFRFSPGTEGYVLSLALPLLSHMESQFPRPLSLLNTAQCFPVGRSHEYIRTLFAALQ
QEYHEDNDAREMMMFSLLSALLVWLTRQEQPLRPRSGSSERKRSVMCLFARQIESQYREHLPLKEYARRTGVSVTHLNQL
CREFHNCSALMVLHERLILEAKRCLQYTQMTISQIADYLGFSDVAYFSRFFKRHTLLSPKAYRGIMNNSDDISETNN
>Mature_316_residues
PRTMSVYPLKMLDKKENMQSVATVPVFKLYGERQGWPTPELLHCESIHQRSSQYEWHIRVHQHAELVQLLYLHHGQAEIE
IEGKTTVMQEACLQVVPALCVHGFRFSPGTEGYVLSLALPLLSHMESQFPRPLSLLNTAQCFPVGRSHEYIRTLFAALQQ
EYHEDNDAREMMMFSLLSALLVWLTRQEQPLRPRSGSSERKRSVMCLFARQIESQYREHLPLKEYARRTGVSVTHLNQLC
REFHNCSALMVLHERLILEAKRCLQYTQMTISQIADYLGFSDVAYFSRFFKRHTLLSPKAYRGIMNNSDDISETNN

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36875; Mature: 36744

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRTMSVYPLKMLDKKENMQSVATVPVFKLYGERQGWPTPELLHCESIHQRSSQYEWHIR
CCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEE
VHQHAELVQLLYLHHGQAEIEIEGKTTVMQEACLQVVPALCVHGFRFSPGTEGYVLSLAL
EHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
PLLSHMESQFPRPLSLLNTAQCFPVGRSHEYIRTLFAALQQEYHEDNDAREMMMFSLLSA
HHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LLVWLTRQEQPLRPRSGSSERKRSVMCLFARQIESQYREHLPLKEYARRTGVSVTHLNQL
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHH
CREFHNCSALMVLHERLILEAKRCLQYTQMTISQIADYLGFSDVAYFSRFFKRHTLLSPK
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCH
AYRGIMNNSDDISETNN
HHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
PRTMSVYPLKMLDKKENMQSVATVPVFKLYGERQGWPTPELLHCESIHQRSSQYEWHIR
CCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEE
VHQHAELVQLLYLHHGQAEIEIEGKTTVMQEACLQVVPALCVHGFRFSPGTEGYVLSLAL
EHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH
PLLSHMESQFPRPLSLLNTAQCFPVGRSHEYIRTLFAALQQEYHEDNDAREMMMFSLLSA
HHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LLVWLTRQEQPLRPRSGSSERKRSVMCLFARQIESQYREHLPLKEYARRTGVSVTHLNQL
HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHH
CREFHNCSALMVLHERLILEAKRCLQYTQMTISQIADYLGFSDVAYFSRFFKRHTLLSPK
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCH
AYRGIMNNSDDISETNN
HHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA