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The map label for this gene is yjfF [H]

Identifier: 218551525

GI number: 218551525

Start: 4421018

End: 4422013

Strand: Direct

Name: yjfF [H]

Synonym: EFER_4309

Alternate gene names: 218551525

Gene position: 4421018-4422013 (Clockwise)

Preceding gene: 218551524

Following gene: 218551527

Centisome position: 96.35

GC content: 52.51

Gene sequence:

>996_bases
GTGATAAAACGTAACCTGCCGCTTATGATCACCATCGGCGTCTTTGTGCTGGGCTATCTCTACTGCCTGACGCAGTTCCC
CGGTTTTGCTTCCACAAGAGTGATCTGCAATATCCTGACCGATAACGCCTTTCTTGGGATCATCGCCGTCGGCATGACTT
TTGTGATCCTCTCCGGTGGGATCGATCTCTCCGTCGGTTCGGTGATCGCCTTTACTGGTGTGTTTCTGGCAAAAGTGATT
GGCGATTTCGGCCTCTCGCCGCTGCTGGCGTTTCCACTGGTGCTGGTGATGGGCTGTGCCTTCGGCGCATTTATGGGGCT
TCTGATTGACGCCCTGAAGATCCCGGCGTTTATCATTACCCTGGCAGGAATGTTCTTTTTGCGCGGCGTTAGCTATCTCG
TTTCGGAAGAATCGATCCCGATAAACCATCCCATTTATGACACGCTTTCAAGCCTGGCGTGGAAAATCCCCGGCGGTGGT
CGCTTAAGCGCGATGGGGTTGCTGATGCTGGCAGTGGTGGTTATCGGCATATTTCTCGCGCATCGTACTCGTTTTGGTAA
TCAGGTATATGCCATTGGTGGCAACGCGACGTCGGCGAACCTGATGGGGATTTCCACTCGCAGCACCACTATCCGCATTT
ATATGCTCTCCACCGGGCTGGCAACGCTGGCGGGGATAGTCTTCTCGATTTATACCCAGGCCGGATATGCGCTGGCGGGC
GTAGGTGTGGAACTGGACGCTATCGCCTCAGTAGTGATTGGCGGTACGTTGTTAAGTGGTGGGGTAGGAACGGTGCTGGG
AACGCTTTTTGGCGTGGCGATTCAGGGGCTCATTCAGACTTATATAAACTTTGATGGCACGCTGAGCTCATGGTGGACGA
AAATTGCCATCGGTATTTTGTTATTCATTTTTATTGCCTTACAGCGTGGGTTAACGGTGCTGTGGGAGAATCGTCAGAGT
TCGCCAGTGACAAGAATCAATATTGCGCAGGAATAA

Upstream 100 bases:

>100_bases
CCGCCAGAGATGAACCAGGTGGTGAAAGCAGTGGTGGTGCTTTGCGTGCTGATTGTTCAGTCGCAACGCTTTATAAGTCT
GATTAAAGGAGTGCGTAGAC

Downstream 100 bases:

>100_bases
TAACGCCTCTCCGTGTGGAGAGGCGCAGGAGATTACGCGTCCGGGAACTCACGGATAAAGCGTTCGACATCTTCAACCAT
ATGGTCATTGCCAACGAAGA

Product: inner membrane ABC transporter permease YjfF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MIKRNLPLMITIGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVI
GDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGG
RLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAG
VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQS
SPVTRINIAQE

Sequences:

>Translated_331_residues
MIKRNLPLMITIGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVI
GDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGG
RLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAG
VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQS
SPVTRINIAQE
>Mature_331_residues
MIKRNLPLMITIGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVI
GDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGG
RLSAMGLLMLAVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAG
VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQS
SPVTRINIAQE

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082395, Length=331, Percent_Identity=99.3957703927493, Blast_Score=643, Evalue=0.0,
Organism=Escherichia coli, GI1790191, Length=301, Percent_Identity=36.5448504983389, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1788896, Length=287, Percent_Identity=36.5853658536585, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1789992, Length=314, Percent_Identity=32.484076433121, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI145693152, Length=271, Percent_Identity=32.1033210332103, Blast_Score=101, Evalue=7e-23,
Organism=Escherichia coli, GI1790524, Length=282, Percent_Identity=31.2056737588652, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787793, Length=324, Percent_Identity=29.6296296296296, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI145693214, Length=252, Percent_Identity=34.1269841269841, Blast_Score=75, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34993; Mature: 34993

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKRNLPLMITIGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGG
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
IDLSVGSVIAFTGVFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIIT
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLA
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHH
HRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAG
HHHHCCCEEEEECCCCCCCEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCEEEE
VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGIL
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LFIFIALQRGLTVLWENRQSSPVTRINIAQE
HHHHHHHHCCCEEEECCCCCCCCEEEEECCC
>Mature Secondary Structure
MIKRNLPLMITIGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGG
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
IDLSVGSVIAFTGVFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIIT
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLA
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHH
HRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAG
HHHHCCCEEEEECCCCCCCEEEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCEEEE
VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGIL
CCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LFIFIALQRGLTVLWENRQSSPVTRINIAQE
HHHHHHHHCCCEEEECCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 2843822; 7984428 [H]