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The map label for this gene is rnr [H]

Identifier: 218551449

GI number: 218551449

Start: 4339986

End: 4342427

Strand: Direct

Name: rnr [H]

Synonym: EFER_4232

Alternate gene names: 218551449

Gene position: 4339986-4342427 (Clockwise)

Preceding gene: 218551448

Following gene: 218551450

Centisome position: 94.58

GC content: 55.16

Gene sequence:

>2442_bases
ATGTCACAAGATCCTTTCCAGGAACGCGAAGCTGAAAAATACGCGAATCCCATCCCTAGTCGGGAATTTATCCTCGAACA
TTTAACCAAACGTGAAAAACCGGCCAGCCGTGATGAGCTGGCGGTAGAACTACACATTGAAGGCGAAGAGCAGCTTGAAG
GCCTGCGTCGCCGCCTGCGTGCGATGGAGCGCGACGGTCAACTGGTCTTCACTCGCCGTCAGTGCTATGCGCTGCCGGAA
CGCCTCGACCTGGTGAAAGGTACCGTTATTGGCCACCGTGATGGCTACGGCTTTCTGCGGGTTGAAGGGCGTAAAGATGA
TTTGTATCTCTCCAGCGAGCAGATGAAAACCTGCATTCATGGCGATCAGGTCCTGGCGCAGCCGCTGGGCGCTGACCGTA
AAGGCCGCCGTGAAGCGCGTATTGTCCGCGTGCTGGTGCCAAAAACCAGCCAGATTGTTGGCCGCTACTTTACCGAAGCG
GGCGTCGGCTTTGTGGTTCCTGACGACAGCCGTCTGAGCTTCGATATCTTAATCCCGCCCGATCAGATCATGGGCGCGCG
GATGGGCTTTGTGGTGGTGGTTGAACTGACTCAACGCCCGACTCGCCGTACCAAAGCGGTGGGTAAAATCGTCGAAGTGC
TGGGCGATAATATGGGCACCGGCATGGCGGTTGATATTGCTCTGCGTACCCATGAAATTCCGTACATCTGGCCGCAGGCT
GTTGAGCAACAGGTTGCCGGGCTGAAAGAAGAAGTGCCGGAAGAGGCGAAAGCTGGCCGTGTCGATCTGCGCGATTTACC
GCTGGTCACCATTGATGGCGAAGACGCCCGTGACTTTGACGATGCAGTTTACTGCGAGAAAAAACGCGGCGGTGGCTGGC
GTTTGTGGGTCGCAATTGCCGATGTCAGCTACTATGTGCGTCCGCCAACACCGCTGGACAGAGAAGCGCGTAACCGTGGT
ACGTCGGTCTACTTCCCTTCGCAGGTTATCCCGATGCTGCCGGAAGTGCTCTCTAACGGCCTGTGTTCGCTCAACCCGCA
GGTAGACCGCCTGTGTATGGTTTGCGAGATGACGATTTCGTCGAAAGGCCGCCTGACGGGCTACAAATTCTACGAAGCGG
TGATGAGCTCTCACGCGCGTCTGACCTACACCAAAGTCTGGCATATTCTGCAGGGCGATCAGGAGCTGCGCGAGCAGTAC
GCCCCGCTGGTTAAGCATCTCGAAGAGTTACATAACCTCTATAAAGTGCTGGATAAAGCCCGTGAAGAACGCGGCGGGAT
CTCATTTGAGAGCGAAGAAGCGAAGTTTATTTTCAACGCTGAACGCCGTATTGAGCGTATCGAACAGACCCAGCGTAACG
ACGCACACAAGTTAATTGAAGAGTGCATGATTCTGGCGAATATCTCGGCGGCGCGTTTCGTTGAGAAGGCCAAAGAACCG
GCACTGTTCCGTATTCACGACAAGCCGAGCACCGAAGCGATAACCTCTTTCCGTTCAGTGCTGGCGGAACTGGGGCTGGA
ATTGCCTGGCGGTAACAAGCCGGAACCACGTGACTACGCGGAACTGCTGGAATCGGTTGCTGACCGTCCTGACGCAGAAA
TGTTGCAAACCATGCTGTTGCGCTCGATGAAACAAGCGATTTACGATCCGGAAAACCGTGGTCACTTCGGTCTGGCATTG
CAGTCCTATGCGCACTTTACTTCGCCGATTCGTCGTTATCCTGACCTGACGCTACACCGCGCCATTAAGTATCTGCTGGC
GAAAGAGCAGGGGCATCAGGGCAACACCACTGAAACCGGCGGCTACCATTATTCGATGGAAGAAATGCTGCAACTGGGTC
AGCACTGTTCGATGGCGGAACGTCGTGCCGACGAAGCAACGCGCGATGTGGCTGACTGGCTGAAGTGTGACTTCATGCTC
GACCAGGTAGGTAACGTCTTTAAAGGCGTGATTTCCAGTGTCACTGGCTTTGGCTTCTTTGTTCGCCTGGATGACTTGTT
CATCGATGGTCTGGTCCACGTCTCTTCGCTGGACAATGACTACTATCGCTTTGACCAGGTGGGACAACGCCTGATGGGTG
AATCCAGCGGCCAGACTTATCGCCTGGGCGATCGCGTGGAAGTTCGCGTCGAAGCGGTTAATATGGACGAGCGCAAAATC
GACTTTAGCCTGATCTCCAGCGAACGCGCACCGCGCAACGTCGGTAAAACCGCGCGCGAGAAAGCGAAAAAAGGCGATGC
AGGCAAAAAAGGCGGCAAGCGTCGCCAGGTCGGTAAAAAGGTAAACTTTGAGCCAGACAGCGCCTTCCGCGGCGAGAAAA
AAACGAAGCCGAAAGCGGCGAAGAAAGACGCGAGAAAAGCGAAAAAGCCATCGGCGAAAACGCAGAAAATAGCCGCAGCG
ACCAAAGCGAAGCGTGCGGCGAAGAAAAAAGTGGCAGAGTGA

Upstream 100 bases:

>100_bases
ACACGCTTGCCGATTTGGTTGAAGAGAATCAACCGCTTTATAAATTATTGCTGGTGGAGTGACGAAAATCTTCATCAGAG
ATGACAACGGAGGAACCGAG

Downstream 100 bases:

>100_bases
TCATTACCCTCTTCAAACAGAAGAGGGTGAATTATCTGTAGGCCGGGCAAGCGTGGCGCTCCCGGCAAAACGTAAACAAC
GAGTATATTAATGAGCGAAA

Product: exoribonuclease R

Products: NA

Alternate protein names: RNase R; Protein vacB [H]

Number of amino acids: Translated: 813; Mature: 812

Protein sequence:

>813_residues
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE
RLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEA
GVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA
VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRG
TSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTISSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQELREQY
APLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLAL
QSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFML
DQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIAAA
TKAKRAAKKKVAE

Sequences:

>Translated_813_residues
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPE
RLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEA
GVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA
VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRG
TSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTISSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQELREQY
APLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLAL
QSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFML
DQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIAAA
TKAKRAAKKKVAE
>Mature_812_residues
SQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPER
LDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAG
VGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAV
EQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGT
SVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTISSKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQELREQYA
PLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPA
LFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQ
SYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLD
QVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKID
FSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIAAAT
KAKRAAKKKVAE

Specific function: 3'-5'exoribonuclease that participates in an essential cell function. Acts nonspecifically on poly(A), poly(U) and ribosomal RNAs. Required for the expression of virulence genes in enteroinvasive strains of E.coli [H]

COG id: COG0557

COG function: function code K; Exoribonuclease R

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI190014623, Length=560, Percent_Identity=28.9285714285714, Blast_Score=185, Evalue=1e-46,
Organism=Homo sapiens, GI190014625, Length=560, Percent_Identity=28.9285714285714, Blast_Score=185, Evalue=1e-46,
Organism=Homo sapiens, GI134288890, Length=416, Percent_Identity=30.5288461538462, Blast_Score=169, Evalue=9e-42,
Organism=Homo sapiens, GI19115966, Length=575, Percent_Identity=25.9130434782609, Blast_Score=145, Evalue=2e-34,
Organism=Homo sapiens, GI219521928, Length=575, Percent_Identity=25.9130434782609, Blast_Score=145, Evalue=2e-34,
Organism=Escherichia coli, GI87082383, Length=813, Percent_Identity=99.6309963099631, Blast_Score=1672, Evalue=0.0,
Organism=Escherichia coli, GI1787542, Length=651, Percent_Identity=25.9600614439324, Blast_Score=166, Evalue=4e-42,
Organism=Caenorhabditis elegans, GI212645896, Length=419, Percent_Identity=30.7875894988067, Blast_Score=180, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI17553506, Length=527, Percent_Identity=27.134724857685, Blast_Score=165, Evalue=1e-40,
Organism=Saccharomyces cerevisiae, GI6324552, Length=564, Percent_Identity=27.3049645390071, Blast_Score=157, Evalue=6e-39,
Organism=Saccharomyces cerevisiae, GI6323943, Length=358, Percent_Identity=25.1396648044693, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24649634, Length=480, Percent_Identity=29.1666666666667, Blast_Score=179, Evalue=9e-45,
Organism=Drosophila melanogaster, GI19922976, Length=353, Percent_Identity=30.3116147308782, Blast_Score=145, Evalue=1e-34,
Organism=Drosophila melanogaster, GI24654597, Length=353, Percent_Identity=30.3116147308782, Blast_Score=145, Evalue=1e-34,
Organism=Drosophila melanogaster, GI24654592, Length=353, Percent_Identity=30.3116147308782, Blast_Score=144, Evalue=2e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011129
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967
- InterPro:   IPR013223
- InterPro:   IPR001900
- InterPro:   IPR022966
- InterPro:   IPR004476
- InterPro:   IPR011805
- InterPro:   IPR013668 [H]

Pfam domain/function: PF08461 HTH_12; PF08206 OB_RNB; PF00773 RNB; PF00575 S1 [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 92148; Mature: 92017

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS50126 S1 ; PS01175 RIBONUCLEASE_II

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR
CCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHH
AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
HHHCCCCEEEEHHHHHHCHHHHHHHHCCEEECCCCCEEEEEECCCCCEEECHHHHHHHHC
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP
CHHHHHHCCCCCCCCCCHHEEEEEECCCHHHHHHHHHHHCCCEEEECCCCCEEEEEEECC
DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA
HHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHH
VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
HHHHHHHHHHHCCHHHHCCCCCCCCCCEEEECCCCCCCCCHHHEEECCCCCCEEEEEEEE
DVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
CCEEEECCCCCCCHHHHCCCCEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQELREQYAPLVKHLEELHNLYKVLDKA
CCCCCCHHHHHHHHHHCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
HHHHCCCCCCCCCCCEEECHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCCC
ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL
CEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCC
GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF
CEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEE
VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI
EEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEECCCEEEEEEEEECCCCHHH
DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAA
HHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHH
KKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEGLRRRLR
CCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCHHHHHHHHHHHH
AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIH
HHHCCCCEEEEHHHHHHCHHHHHHHHCCEEECCCCCEEEEEECCCCCEEECHHHHHHHHC
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP
CHHHHHHCCCCCCCCCCHHEEEEEECCCHHHHHHHHHHHCCCEEEECCCCCEEEEEEECC
DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQA
HHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCHHH
VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
HHHHHHHHHHHCCHHHHCCCCCCCCCCEEEECCCCCCCCCHHHEEECCCCCCEEEEEEEE
DVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
CCEEEECCCCCCCHHHHCCCCEEEECHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQELREQYAPLVKHLEELHNLYKVLDKA
CCCCCCHHHHHHHHHHCCCCEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
HHHHCCCCCCCCCCCEEECHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHCCC
ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL
CEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETG
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCC
GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF
CEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEE
VRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI
EEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCEEECCCEEEEEEEEECCCCHHH
DFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKTKPKAA
HHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHH
KKDARKAKKPSAKTQKIAAATKAKRAAKKKVAE
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 3058695; 1400189; 9603904 [H]