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The map label for this gene is yjcD [H]

Identifier: 218551384

GI number: 218551384

Start: 4268485

End: 4269834

Strand: Direct

Name: yjcD [H]

Synonym: EFER_4165

Alternate gene names: 218551384

Gene position: 4268485-4269834 (Clockwise)

Preceding gene: 218551383

Following gene: 218551385

Centisome position: 93.02

GC content: 53.78

Gene sequence:

>1350_bases
ATGTCTACGCCATCAGCGCGTACCGGCGGTTCACTCGACGCCTGGTTTAAAATTTCACAACGTGGAAGCACTGTCCGTCA
GGAAGTGGTTGCCGGGTTAACGACCTTCCTGGCGATGGTCTACTCCGTTATCGTCGTTCCGGGAATGCTGGGTAAAGCGG
GCTTCCCGCCAGCAGCCGTTTTCGTTGCTACTTGTCTGGTTGCGGGAATCGGCTCGATTGTGATGGGGCTGTGGGCTAAT
TTGCCGCTGGCTATCGGCTGTGCGATTTCCCTGACCGCATTTACTGCGTTCAGTCTGGTGTTAGGGCAACAAATTAGTGT
TCCGGTGGCGCTGGGTGCGGTATTCCTGATGGGGGTGCTGTTTACGGTAATTTCCGCCACGGGTATCCGTAGCTGGATTT
TACGTAACTTACCGCAAGGTGTGGCGCATGGTACGGGGATTGGTATCGGCCTGTTCCTGTTATTGATCGCAGCCAACGGT
GTTGGCCTGGTTATCAAAAACCCACTGGATGGTTTGCCTGTTGCGCTGGGTGATTTCGCCACTTTCCCGGTGATTATGTC
ACTGGTAGGTCTGGCGGTGATTATCGGCCTGGAAAAACTGAAAGTACCGGGCGGCATTCTGCTGACCATTATCGGGATCT
CTATTGTTGGTCTGATTTTCGATCCTAATGTGCATTTCTCCGGTGTTTTCGCCATGCCGTCGCTGAGCGATGAAAATGGT
AATTCACTGATTGGCAGCCTGGACATTATGGGCACGCTAAATCCACTGGTTCTGCCGAGCGTGTTGGCACTGGTGATGAC
CGCAGTCTTTGACGCCACCGGGACAATCCGGGCTGTTGCCGGACAGGCGAATCTGCTGGATAAAGACGGGCAAATTATCG
ACGGCGGGAAAGCGTTGACAACCGACTCCCTGAGCAGCGTTTTCTCTGGTCTGGTTGGGGCCGCTCCAGCTGCGGTTTAT
ATCGAATCGGCCGCAGGTACGGCAGCAGGCGGTAAAACCGGTCTGACGGCGATCACCGTGGGCGTATTGTTCCTGCTGAT
ACTGTTCCTTTCTCCGCTTTCTTATCTTGTGCCGGGTTATGCAACAGCTCCGGCGCTGATGTACGTTGGCTTGCTGATGC
TGAGCAACGTGGCGAAAATTGATTTTGCTGACTTTGTCGATGCGATGGCAGGCCTGGTGACAGCGGTGTTTATCGTGCTG
ACATGTAATATCGTGACCGGCATTATGATTGGCTTCGCGACGCTGGTGATTGGTCGTCTGGTTTCCGGTGAATGGCGTAA
ACTGAACATTGGTACAGTCCTGATTGCTGTCGCTCTGGTTGCTTTTTATGCAGGAGGCTGGGCAATCTGA

Upstream 100 bases:

>100_bases
TTATTGTCGCAAACCTGGACCAGGAAGATAACGTGACGCTGGCAGTGGATTGTCCACCTCGCATACCGACGAAATAATAA
ACTCTCAGGGGATGTTTTCT

Downstream 100 bases:

>100_bases
TTCTGATTTTATACAGAAATCCGAAAACGGGCGGCTTTTGCTGCCCGTTTCTATTTTCTGCGCACATCGCGGGAGCTTTT
GCGATATTCTGAAAACGCGA

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 449; Mature: 448

Protein sequence:

>449_residues
MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGIGSIVMGLWAN
LPLAIGCAISLTAFTAFSLVLGQQISVPVALGAVFLMGVLFTVISATGIRSWILRNLPQGVAHGTGIGIGLFLLLIAANG
VGLVIKNPLDGLPVALGDFATFPVIMSLVGLAVIIGLEKLKVPGGILLTIIGISIVGLIFDPNVHFSGVFAMPSLSDENG
NSLIGSLDIMGTLNPLVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIIDGGKALTTDSLSSVFSGLVGAAPAAVY
IESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPGYATAPALMYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVL
TCNIVTGIMIGFATLVIGRLVSGEWRKLNIGTVLIAVALVAFYAGGWAI

Sequences:

>Translated_449_residues
MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGIGSIVMGLWAN
LPLAIGCAISLTAFTAFSLVLGQQISVPVALGAVFLMGVLFTVISATGIRSWILRNLPQGVAHGTGIGIGLFLLLIAANG
VGLVIKNPLDGLPVALGDFATFPVIMSLVGLAVIIGLEKLKVPGGILLTIIGISIVGLIFDPNVHFSGVFAMPSLSDENG
NSLIGSLDIMGTLNPLVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIIDGGKALTTDSLSSVFSGLVGAAPAAVY
IESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPGYATAPALMYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVL
TCNIVTGIMIGFATLVIGRLVSGEWRKLNIGTVLIAVALVAFYAGGWAI
>Mature_448_residues
STPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGIGSIVMGLWANL
PLAIGCAISLTAFTAFSLVLGQQISVPVALGAVFLMGVLFTVISATGIRSWILRNLPQGVAHGTGIGIGLFLLLIAANGV
GLVIKNPLDGLPVALGDFATFPVIMSLVGLAVIIGLEKLKVPGGILLTIIGISIVGLIFDPNVHFSGVFAMPSLSDENGN
SLIGSLDIMGTLNPLVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIIDGGKALTTDSLSSVFSGLVGAAPAAVYI
ESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPGYATAPALMYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVLT
CNIVTGIMIGFATLVIGRLVSGEWRKLNIGTVLIAVALVAFYAGGWAI

Specific function: Unknown

COG id: COG2252

COG function: function code R; Permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790499, Length=449, Percent_Identity=98.2182628062361, Blast_Score=847, Evalue=0.0,
Organism=Escherichia coli, GI48994909, Length=450, Percent_Identity=82.6666666666667, Blast_Score=709, Evalue=0.0,
Organism=Escherichia coli, GI87082309, Length=431, Percent_Identity=40.3712296983759, Blast_Score=299, Evalue=2e-82,
Organism=Escherichia coli, GI1790150, Length=431, Percent_Identity=35.4988399071926, Blast_Score=253, Evalue=1e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 45704; Mature: 45573

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCCEEEEHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
STPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAV
CCCCCCCCCCHHHHEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
FVATCLVAGIGSIVMGLWANLPLAIGCAISLTAFTAFSLVLGQQISVPVALGAVFLMGVL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
FTVISATGIRSWILRNLPQGVAHGTGIGIGLFLLLIAANGVGLVIKNPLDGLPVALGDFA
HHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHH
TFPVIMSLVGLAVIIGLEKLKVPGGILLTIIGISIVGLIFDPNVHFSGVFAMPSLSDENG
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCC
NSLIGSLDIMGTLNPLVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIIDGGKALT
CCEEEEEHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHEECCCCCCCCCCCCEECCCCCCC
TDSLSSVFSGLVGAAPAAVYIESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPGY
HHHHHHHHHHHHHCCCHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCH
ATAPALMYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVLTCNIVTGIMIGFATLVIGRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VSGEWRKLNIGTVLIAVALVAFYAGGWAI
HCCCCEEEEHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]