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The map label for this gene is yjbH [H]

Identifier: 218551342

GI number: 218551342

Start: 4218183

End: 4220279

Strand: Direct

Name: yjbH [H]

Synonym: EFER_4121

Alternate gene names: 218551342

Gene position: 4218183-4220279 (Clockwise)

Preceding gene: 218551341

Following gene: 218551343

Centisome position: 91.93

GC content: 53.36

Gene sequence:

>2097_bases
ATGAAAAAAAGACATCTGCTTAGTTTACTGGCGCTGGGCATTAGCACGGCTTGCTATGGCGAAACATATCCTGCGCCCAT
TGGTCCGTCGCAATCGGATTTCGGTGGTGTAGGATTATTACAAACACCTACCGCGCGCATGGCGCGGGAAGGGGAGTTGA
GTCTGAACTATCGCGATAACGATCAGTACCGTTATTACTCAGCTTCAGTGCAACTCTTCCCGTGGCTGGAAACAACGCTG
CGTTATACCGACGTGCGCACTCGGCAGTACAGCAGCGTCGAAGCGTTCTCTGGTGATCAAACGTATAAAGATAAAGCCTT
CGATCTCAAACTGCGTTTATGGGAAGAGAGTTACTGGCTGCCGCAGATAGCGGTTGGTGCGCGGGATATCGGCGGTACGG
GGCTGTTCGATGCGGAATATCTTGTCGCCAGCAAAGCCTGGGGGCCATTCGATTTTACGCTCGGCCTGGGCTGGGGATAT
CTGGGCACCAGCGGTAACGTGAAAAATCCGCTCTGTTCAGCCAGTGACAAATATTGCTATCGCGATAACAGCTACAAACA
AGCGGGATCTATCGACGGCAGCCAGATGTTCCACGGTCCGGCCTCACTGTTTGGCGGCGTGGAATACCAGACGCCCTGGC
AGCCGCTGCGTCTGAAACTGGAGTATGAAGGCAATAATTATCAGCAGGATTTTGCCGGGAAGCTGGAGCAAAAAAGTAAG
TTTAACGTCGGGGCGATTTATCGCGTTACCGATTGGGCCGACGTTAACCTTAGCTATGAACGCGGTAACACCTTTATGTT
TGGCGTCACGCTGCGTACCAACTTTAACGATCTACGCCCGTCCTACAATGATAACGCCCGTCCGCAATATCAACCGCAGC
CGCAGGATGCCATTTTGCAGCATTCGGTGGTGGCGAATCAGTTAACGCTGTTGAAATACAACGCCGGACTGGCCGATCCG
CAGATCCAGACGAAAGGCGATACGCTGTACGTCACCGGTGAGCAGGTGAAATATCGTGATTCGCGTGAAGGGATCATCCG
TGCTAATCGGATCGTGATGAACGATCTGCCGGAGGGGATCAAGACGATCCGCGTTACAGAAAATCGCCTTAACATGCCGC
AGGTGACGACGGAAACCGATGTAGCCAGCCTGAAAAATCATCTTGCCGGAGAGCCGTTGGGCCACGAAACGACGCTGGCG
CAAAAACGCGTCGAGCCGGTAGTTCCTGCGTCCACCGAGCAGGGCTGGTATATAGACAAATCACGCTTTGATTTCCATAT
CGATCCGGTGCTGAACCAGTCGGTCGGTGGCCCGGAAAACTTTTACATGTACCAGCTGGGCGTGATAGGAACGGCGGATT
TGTGGCTGACGGACCATCTGCTGACCACCGGTAGTCTGTTTGCTAACCTGGCGAACAATTACGACAAGTTTAATTACACC
AATCCACCGCAGGACTCGCACTTACCGCGCGTTCGTACCCATGTGCGTGAGTATGTGCAGAATGATGTCTATGTGAATAA
CCTGCAAGCCAACTACTTCCAGCATCTGGGCAACGGCTTCTACGGTCAGGTCTACGGTGGTTATCTCGAAACCATGTTTG
GCGGCGTGGGGGCAGAGGTGTTGTATCGCCCGCTGGATAGCAACTGGGCGTTTGGTCTGGATGCTAACTACGTTAAACAG
CGCGACTGGCGTAGCGCGAAAGATATGATGAAATTCACCGATTACAGCGTGAAAACTGGTCATTTGACCGCATACTGGAC
GCCATCTTTCGCTCAGGATGTATTAGTGAAAGCCAGCGTCGGGCAATATCTGGCAGGGGATAAAGGCGGCACGCTGGAAA
TCGCCAAACGCTTTGACAGCGGCGTGGTAGTGGGTGGGTATGCCACGATCACGAATGTTTCGAAAGAGGAGTACGGCGAA
GGGGACTTCACCAAAGGCGTGTATATCTCTGTACCGTTGGATCTCTTCTCGTCTGGCCCGACTCGTAGCCGGGCGGCAAT
TGGCTGGACGCCGCTGACGCGCGACGGTGGTCAGCAACTTGGGCGTAAGTTCCAGTTGTATGACATGACCAGCGACCGAA
GCGTCAATTTCCGCTAA

Upstream 100 bases:

>100_bases
GCATTATTTATGTTGGCCTCGCGGACTCCGTCTGGAGTGAGACGCCTGATGCCCTTAACGCTGACATTCTTCAGACTCTG
ACGCAGCGGATACCGCAATA

Downstream 100 bases:

>100_bases
CAAGCAGCGCCGAATACAGGAATCGTATTCGGCGTTGAACAAAACATACACAAAAAATATAGATCTCCGTCACATTTTTG
CGTTATACAGGAAGCTCGCC

Product: porin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 698; Mature: 698

Protein sequence:

>698_residues
MKKRHLLSLLALGISTACYGETYPAPIGPSQSDFGGVGLLQTPTARMAREGELSLNYRDNDQYRYYSASVQLFPWLETTL
RYTDVRTRQYSSVEAFSGDQTYKDKAFDLKLRLWEESYWLPQIAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGY
LGTSGNVKNPLCSASDKYCYRDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLEQKSK
FNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFNDLRPSYNDNARPQYQPQPQDAILQHSVVANQLTLLKYNAGLADP
QIQTKGDTLYVTGEQVKYRDSREGIIRANRIVMNDLPEGIKTIRVTENRLNMPQVTTETDVASLKNHLAGEPLGHETTLA
QKRVEPVVPASTEQGWYIDKSRFDFHIDPVLNQSVGGPENFYMYQLGVIGTADLWLTDHLLTTGSLFANLANNYDKFNYT
NPPQDSHLPRVRTHVREYVQNDVYVNNLQANYFQHLGNGFYGQVYGGYLETMFGGVGAEVLYRPLDSNWAFGLDANYVKQ
RDWRSAKDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASVGQYLAGDKGGTLEIAKRFDSGVVVGGYATITNVSKEEYGE
GDFTKGVYISVPLDLFSSGPTRSRAAIGWTPLTRDGGQQLGRKFQLYDMTSDRSVNFR

Sequences:

>Translated_698_residues
MKKRHLLSLLALGISTACYGETYPAPIGPSQSDFGGVGLLQTPTARMAREGELSLNYRDNDQYRYYSASVQLFPWLETTL
RYTDVRTRQYSSVEAFSGDQTYKDKAFDLKLRLWEESYWLPQIAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGY
LGTSGNVKNPLCSASDKYCYRDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLEQKSK
FNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFNDLRPSYNDNARPQYQPQPQDAILQHSVVANQLTLLKYNAGLADP
QIQTKGDTLYVTGEQVKYRDSREGIIRANRIVMNDLPEGIKTIRVTENRLNMPQVTTETDVASLKNHLAGEPLGHETTLA
QKRVEPVVPASTEQGWYIDKSRFDFHIDPVLNQSVGGPENFYMYQLGVIGTADLWLTDHLLTTGSLFANLANNYDKFNYT
NPPQDSHLPRVRTHVREYVQNDVYVNNLQANYFQHLGNGFYGQVYGGYLETMFGGVGAEVLYRPLDSNWAFGLDANYVKQ
RDWRSAKDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASVGQYLAGDKGGTLEIAKRFDSGVVVGGYATITNVSKEEYGE
GDFTKGVYISVPLDLFSSGPTRSRAAIGWTPLTRDGGQQLGRKFQLYDMTSDRSVNFR
>Mature_698_residues
MKKRHLLSLLALGISTACYGETYPAPIGPSQSDFGGVGLLQTPTARMAREGELSLNYRDNDQYRYYSASVQLFPWLETTL
RYTDVRTRQYSSVEAFSGDQTYKDKAFDLKLRLWEESYWLPQIAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGY
LGTSGNVKNPLCSASDKYCYRDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLEQKSK
FNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFNDLRPSYNDNARPQYQPQPQDAILQHSVVANQLTLLKYNAGLADP
QIQTKGDTLYVTGEQVKYRDSREGIIRANRIVMNDLPEGIKTIRVTENRLNMPQVTTETDVASLKNHLAGEPLGHETTLA
QKRVEPVVPASTEQGWYIDKSRFDFHIDPVLNQSVGGPENFYMYQLGVIGTADLWLTDHLLTTGSLFANLANNYDKFNYT
NPPQDSHLPRVRTHVREYVQNDVYVNNLQANYFQHLGNGFYGQVYGGYLETMFGGVGAEVLYRPLDSNWAFGLDANYVKQ
RDWRSAKDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASVGQYLAGDKGGTLEIAKRFDSGVVVGGYATITNVSKEEYGE
GDFTKGVYISVPLDLFSSGPTRSRAAIGWTPLTRDGGQQLGRKFQLYDMTSDRSVNFR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ymcA [H]

Homologues:

Organism=Escherichia coli, GI1790461, Length=698, Percent_Identity=98.8538681948424, Blast_Score=1434, Evalue=0.0,
Organism=Escherichia coli, GI1787219, Length=696, Percent_Identity=64.6551724137931, Blast_Score=951, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010344 [H]

Pfam domain/function: PF06082 DUF940 [H]

EC number: NA

Molecular weight: Translated: 78503; Mature: 78503

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRHLLSLLALGISTACYGETYPAPIGPSQSDFGGVGLLQTPTARMAREGELSLNYRDN
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCHHHHCCCCCEEEEECCC
DQYRYYSASVQLFPWLETTLRYTDVRTRQYSSVEAFSGDQTYKDKAFDLKLRLWEESYWL
CCEEEEEEEEEEEECHHHHHHHHHCCHHCCCCCEECCCCCCCCCCEEEEEEEEECCCCCC
PQIAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGYLGTSGNVKNPLCSASDKYCY
CEEECCCCCCCCCCCCCCHHHEEECCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCEEE
RDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLEQKSK
CCCCCCCCCCCCCHHHCCCHHHHHCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCC
FNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFNDLRPSYNDNARPQYQPQPQDAILQ
CCCEEEEEEECEEEEEEEEECCCEEEEEEEEECCCHHCCCCCCCCCCCCCCCCCHHHHHH
HSVVANQLTLLKYNAGLADPQIQTKGDTLYVTGEQVKYRDSREGIIRANRIVMNDLPEGI
HHHHHCEEEEEEECCCCCCCCEEECCCEEEEECCCEEECCCCCCEEEECEEEECCCCCCC
KTIRVTENRLNMPQVTTETDVASLKNHLAGEPLGHETTLAQKRVEPVVPASTEQGWYIDK
EEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEC
SRFDFHIDPVLNQSVGGPENFYMYQLGVIGTADLWLTDHLLTTGSLFANLANNYDKFNYT
CCCCEEECCHHCCCCCCCCCEEEEEECCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
NPPQDSHLPRVRTHVREYVQNDVYVNNLQANYFQHLGNGFYGQVYGGYLETMFGGVGAEV
CCCCCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCC
LYRPLDSNWAFGLDANYVKQRDWRSAKDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASV
EEEECCCCEEECCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCHHHHHHHHHHHH
GQYLAGDKGGTLEIAKRFDSGVVVGGYATITNVSKEEYGEGDFTKGVYISVPLDLFSSGP
CHHHCCCCCCEEHHHHHCCCCEEEECCCEEECCCHHHCCCCCCCCCEEEEEEHHHHCCCC
TRSRAAIGWTPLTRDGGQQLGRKFQLYDMTSDRSVNFR
CCCCEEECCCCCCCCCHHHHCCEEEEEECCCCCCCCCC
>Mature Secondary Structure
MKKRHLLSLLALGISTACYGETYPAPIGPSQSDFGGVGLLQTPTARMAREGELSLNYRDN
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCHHHHCCCCCEEEEECCC
DQYRYYSASVQLFPWLETTLRYTDVRTRQYSSVEAFSGDQTYKDKAFDLKLRLWEESYWL
CCEEEEEEEEEEEECHHHHHHHHHCCHHCCCCCEECCCCCCCCCCEEEEEEEEECCCCCC
PQIAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGYLGTSGNVKNPLCSASDKYCY
CEEECCCCCCCCCCCCCCHHHEEECCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCEEE
RDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRLKLEYEGNNYQQDFAGKLEQKSK
CCCCCCCCCCCCCHHHCCCHHHHHCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCC
FNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFNDLRPSYNDNARPQYQPQPQDAILQ
CCCEEEEEEECEEEEEEEEECCCEEEEEEEEECCCHHCCCCCCCCCCCCCCCCCHHHHHH
HSVVANQLTLLKYNAGLADPQIQTKGDTLYVTGEQVKYRDSREGIIRANRIVMNDLPEGI
HHHHHCEEEEEEECCCCCCCCEEECCCEEEEECCCEEECCCCCCEEEECEEEECCCCCCC
KTIRVTENRLNMPQVTTETDVASLKNHLAGEPLGHETTLAQKRVEPVVPASTEQGWYIDK
EEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEC
SRFDFHIDPVLNQSVGGPENFYMYQLGVIGTADLWLTDHLLTTGSLFANLANNYDKFNYT
CCCCEEECCHHCCCCCCCCCEEEEEECCEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
NPPQDSHLPRVRTHVREYVQNDVYVNNLQANYFQHLGNGFYGQVYGGYLETMFGGVGAEV
CCCCCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCC
LYRPLDSNWAFGLDANYVKQRDWRSAKDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASV
EEEECCCCEEECCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCHHHHHHHHHHHH
GQYLAGDKGGTLEIAKRFDSGVVVGGYATITNVSKEEYGEGDFTKGVYISVPLDLFSSGP
CHHHCCCCCCEEHHHHHCCCCEEEECCCEEECCCHHHCCCCCCCCCEEEEEEHHHHCCCC
TRSRAAIGWTPLTRDGGQQLGRKFQLYDMTSDRSVNFR
CCCCEEECCCCCCCCCHHHHCCEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]