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The map label for this gene is yjbF [H]

Identifier: 218551340

GI number: 218551340

Start: 4216811

End: 4217449

Strand: Direct

Name: yjbF [H]

Synonym: EFER_4119

Alternate gene names: 218551340

Gene position: 4216811-4217449 (Clockwise)

Preceding gene: 218551338

Following gene: 218551341

Centisome position: 91.9

GC content: 54.93

Gene sequence:

>639_bases
GTGAAGCGACCTGCACTCATTCTTATCTGCCTGCTATTACAGGCCTGTTCAGCCACGACTCAAGAGCTGGGCAATTCACT
GTGGGACAGTCTGTTCGGTACGCCAGGCGTACAGCTGACGGACGATGATATTCAAAATATGCCCTACGCCAGCCAGTACA
TGCAGCTTAATGGCGGGCCGCAGTTGTTTGTGGTGCTGGCCTTCGCTGAAGACGGACAACAAAAATGGGTCACTCAGGAT
CAGGCCACTCTCGTCACACAACATGGTCGTCTGGTGAAGACTTTGCTTGGCGGCGACAACCTGATTGAAGTGAATAACCT
TGCCGCCGACCCGCTGATTAAACCCGCACAAATTGTTGATGGCGCAACATGGACGCGCACGATGGGCTGGACCGAGTACC
AGCAGGTACGCTACGCCACCGCGCGCTCAGTCTTCAAATGGAATGGCACCGATACCGTCAAAGTCGGCAGCGATGAAACC
CCGGTTCGCGTGCTGGACGAAGAAGTCTCCACCGACCAGGCGCGCTGGCATAACCGCTATTGGATCGACAGCGAAGGGCA
AATTCGCCAGTCGGAACAGTATCTCGGCGCGGATTATTTCCCGGTGAAAACCACTCTCATCAAGGCGGCAAAACAATGA

Upstream 100 bases:

>100_bases
CCAAAATAATTTGAGTCATCGCATCTGTGGCTTGAAGTATGACGGGGATTAACCATAACCACACTCCGGTGTGGTTATTC
TGCCCCTCTGGAGAAGAGTC

Downstream 100 bases:

>100_bases
TTAAACAAACTATTGCTGCGTTGATTATGAGCGTGGGAGCGTCATCGGTCTTTGCGGCAGGAACCGTCAAAGTGTTCAGC
AATGGCAGCAATGAGGCCAA

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MKRPALILICLLLQACSATTQELGNSLWDSLFGTPGVQLTDDDIQNMPYASQYMQLNGGPQLFVVLAFAEDGQQKWVTQD
QATLVTQHGRLVKTLLGGDNLIEVNNLAADPLIKPAQIVDGATWTRTMGWTEYQQVRYATARSVFKWNGTDTVKVGSDET
PVRVLDEEVSTDQARWHNRYWIDSEGQIRQSEQYLGADYFPVKTTLIKAAKQ

Sequences:

>Translated_212_residues
MKRPALILICLLLQACSATTQELGNSLWDSLFGTPGVQLTDDDIQNMPYASQYMQLNGGPQLFVVLAFAEDGQQKWVTQD
QATLVTQHGRLVKTLLGGDNLIEVNNLAADPLIKPAQIVDGATWTRTMGWTEYQQVRYATARSVFKWNGTDTVKVGSDET
PVRVLDEEVSTDQARWHNRYWIDSEGQIRQSEQYLGADYFPVKTTLIKAAKQ
>Mature_212_residues
MKRPALILICLLLQACSATTQELGNSLWDSLFGTPGVQLTDDDIQNMPYASQYMQLNGGPQLFVVLAFAEDGQQKWVTQD
QATLVTQHGRLVKTLLGGDNLIEVNNLAADPLIKPAQIVDGATWTRTMGWTEYQQVRYATARSVFKWNGTDTVKVGSDET
PVRVLDEEVSTDQARWHNRYWIDSEGQIRQSEQYLGADYFPVKTTLIKAAKQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ymcC [H]

Homologues:

Organism=Escherichia coli, GI87082360, Length=212, Percent_Identity=98.5849056603774, Blast_Score=433, Evalue=1e-123,
Organism=Escherichia coli, GI1787221, Length=212, Percent_Identity=39.1509433962264, Blast_Score=162, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021308 [H]

Pfam domain/function: PF11102 DUF2886 [H]

EC number: NA

Molecular weight: Translated: 23768; Mature: 23768

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRPALILICLLLQACSATTQELGNSLWDSLFGTPGVQLTDDDIQNMPYASQYMQLNGGP
CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCEECCCHHHCCCCHHHHEEECCCC
QLFVVLAFAEDGQQKWVTQDQATLVTQHGRLVKTLLGGDNLIEVNNLAADPLIKPAQIVD
EEEEEEEECCCCCHHHCCCCHHHHHHHCCHHHHHHHCCCCEEEECCCCCCCCCCCHHHHC
GATWTRTMGWTEYQQVRYATARSVFKWNGTDTVKVGSDETPVRVLDEEVSTDQARWHNRY
CCCCEECCCCHHHHHHHHHHHHHEEEECCCCEEEECCCCCCHHHHHHHHCCHHHHHCCCE
WIDSEGQIRQSEQYLGADYFPVKTTLIKAAKQ
EECCCCCCCHHHHHCCCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MKRPALILICLLLQACSATTQELGNSLWDSLFGTPGVQLTDDDIQNMPYASQYMQLNGGP
CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCEECCCHHHCCCCHHHHEEECCCC
QLFVVLAFAEDGQQKWVTQDQATLVTQHGRLVKTLLGGDNLIEVNNLAADPLIKPAQIVD
EEEEEEEECCCCCHHHCCCCHHHHHHHCCHHHHHHHCCCCEEEECCCCCCCCCCCHHHHC
GATWTRTMGWTEYQQVRYATARSVFKWNGTDTVKVGSDETPVRVLDEEVSTDQARWHNRY
CCCCEECCCCHHHHHHHHHHHHHEEEECCCCEEEECCCCCCHHHHHHHHCCHHHHHCCCE
WIDSEGQIRQSEQYLGADYFPVKTTLIKAAKQ
EECCCCCCCHHHHHCCCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]