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The map label for this gene is yidP [H]

Identifier: 218551214

GI number: 218551214

Start: 4083877

End: 4084593

Strand: Direct

Name: yidP [H]

Synonym: EFER_3979

Alternate gene names: 218551214

Gene position: 4083877-4084593 (Clockwise)

Preceding gene: 218551208

Following gene: 218551218

Centisome position: 89.0

GC content: 44.35

Gene sequence:

>717_bases
ATGATCTATAAAACAATAGCTGAACATCTCAGGCAGCGAGTTAACAGGTCTGATTATGCAATTAATACTCCCTTACCAGG
GGAAAAAAAGTTAGCGCAAGAGTATAAGGTCTCGCGTATGACGATCCGCAAGGCGATTGATATTTTGGTGGATTTGGGCC
TGGTGGTACGTCGGCATGGCAGCGGCACATTCATTGTGGCGAAAGATATTCACCATGAATGCGAGCAATTATCAGGATTA
GTGGAAATCTTGAAACGTCAGGGAAAGAATGTAGTCAGTAACGTACTCACTTTTGAAGTGATGCCTGCCCCACCTTCAAT
TGCCAGCCAGTTACGCCTGCAAATAAATGAACGTATCTACTATTCTCGTCGTGTACGCTTCGTTGATAACAAATTACTGA
TGCTGGAAGACAGTTACATGCCAGTAAAACTGTTTCCAAAACTTTCGTTAGCCCATCTGGAAGGTTCAAAATTCGACTAT
ATCGAAAAGGAATGTGGGATCCTGATTGGTGGTAATTATGAAAGCCTGGCCCCCGTGCTCGCTGATAAGCAGTTGGCATT
GCTGATGAACGTTCCGCCACAAACGCCGTTATTGCGAATCACTTCATTGTGTTACAGCAATAGTGGCGAGTACCTGAACT
ATTCGGTGATGTATCGAAACGCCAGTGAATATCAGGTGGATTACCATATTCGGCGCATCCACCCGATGACGATTTAA

Upstream 100 bases:

>100_bases
CGTATTAAATAACATCATGAGCAACTCTTTGTTTTAACAAAAAACAATTTAAAAATATAATAACATCCAAGAATAATTTT
CTTAAAAAAGAGATCTACTC

Downstream 100 bases:

>100_bases
CTCATTCCCCAGAACAAAACAGCCAGCAGCTGTGGCGTGATAATTCGCAAGAACATCACCAACGGATAAACGGTAGCATA
GGAGAGCGCCGCCGCACCGC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MIYKTIAEHLRQRVNRSDYAINTPLPGEKKLAQEYKVSRMTIRKAIDILVDLGLVVRRHGSGTFIVAKDIHHECEQLSGL
VEILKRQGKNVVSNVLTFEVMPAPPSIASQLRLQINERIYYSRRVRFVDNKLLMLEDSYMPVKLFPKLSLAHLEGSKFDY
IEKECGILIGGNYESLAPVLADKQLALLMNVPPQTPLLRITSLCYSNSGEYLNYSVMYRNASEYQVDYHIRRIHPMTI

Sequences:

>Translated_238_residues
MIYKTIAEHLRQRVNRSDYAINTPLPGEKKLAQEYKVSRMTIRKAIDILVDLGLVVRRHGSGTFIVAKDIHHECEQLSGL
VEILKRQGKNVVSNVLTFEVMPAPPSIASQLRLQINERIYYSRRVRFVDNKLLMLEDSYMPVKLFPKLSLAHLEGSKFDY
IEKECGILIGGNYESLAPVLADKQLALLMNVPPQTPLLRITSLCYSNSGEYLNYSVMYRNASEYQVDYHIRRIHPMTI
>Mature_238_residues
MIYKTIAEHLRQRVNRSDYAINTPLPGEKKLAQEYKVSRMTIRKAIDILVDLGLVVRRHGSGTFIVAKDIHHECEQLSGL
VEILKRQGKNVVSNVLTFEVMPAPPSIASQLRLQINERIYYSRRVRFVDNKLLMLEDSYMPVKLFPKLSLAHLEGSKFDY
IEKECGILIGGNYESLAPVLADKQLALLMNVPPQTPLLRITSLCYSNSGEYLNYSVMYRNASEYQVDYHIRRIHPMTI

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=235, Percent_Identity=74.0425531914894, Blast_Score=369, Evalue=1e-103,
Organism=Escherichia coli, GI1786950, Length=224, Percent_Identity=29.9107142857143, Blast_Score=130, Evalue=6e-32,
Organism=Escherichia coli, GI87082252, Length=223, Percent_Identity=24.2152466367713, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1790540, Length=214, Percent_Identity=28.5046728971963, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788418, Length=217, Percent_Identity=23.5023041474654, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27339; Mature: 27339

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYKTIAEHLRQRVNRSDYAINTPLPGEKKLAQEYKVSRMTIRKAIDILVDLGLVVRRHG
CCHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
SGTFIVAKDIHHECEQLSGLVEILKRQGKNVVSNVLTFEVMPAPPSIASQLRLQINERIY
CCEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHH
YSRRVRFVDNKLLMLEDSYMPVKLFPKLSLAHLEGSKFDYIEKECGILIGGNYESLAPVL
HHHEEEEECCEEEEEECCCCCEEECCCEEEECCCCCCCCHHHHHCCEEECCCHHHHHHHH
ADKQLALLMNVPPQTPLLRITSLCYSNSGEYLNYSVMYRNASEYQVDYHIRRIHPMTI
CCCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEEEEEECCCC
>Mature Secondary Structure
MIYKTIAEHLRQRVNRSDYAINTPLPGEKKLAQEYKVSRMTIRKAIDILVDLGLVVRRHG
CCHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
SGTFIVAKDIHHECEQLSGLVEILKRQGKNVVSNVLTFEVMPAPPSIASQLRLQINERIY
CCEEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHH
YSRRVRFVDNKLLMLEDSYMPVKLFPKLSLAHLEGSKFDYIEKECGILIGGNYESLAPVL
HHHEEEEECCEEEEEECCCCCEEECCCEEEECCCCCCCCHHHHHCCEEECCCHHHHHHHH
ADKQLALLMNVPPQTPLLRITSLCYSNSGEYLNYSVMYRNASEYQVDYHIRRIHPMTI
CCCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]