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The map label for this gene is ydeL [H]

Identifier: 218551069

GI number: 218551069

Start: 3919036

End: 3920547

Strand: Direct

Name: ydeL [H]

Synonym: EFER_3823

Alternate gene names: 218551069

Gene position: 3919036-3920547 (Clockwise)

Preceding gene: 218551068

Following gene: 218551072

Centisome position: 85.41

GC content: 58.6

Gene sequence:

>1512_bases
TTGCTTAACGTAAGGAATAAAAACGTATTGATGAACACTGGGAATTTCGAGTCGATACAAATCATGATCGACGCGCAAGA
GTGGCGTAGCCTGCCGCTGCATCTGCGTCTGTATCAGGCTTTTCGTCAGTTGGTGATATCTGGAGTGTTGGCCGATGGCG
CAAAGCTGCCTTCCGCTCGCGCACTGGCCCAGCAACTTGGCCTTTCCAGAGATACCGTCGAAAATGCCTATTCCCAGCTC
CACCGCGACGGTTTTATGGCTCGCAGGCAGGGGGCCGGGAGTTTCGCCAGCCGCCAGGGGATACCGCATATTCAGGGCCA
GCACGCGCAACCACCCTCGCCCGGGCAAGTACCGGCTTTAAGCGCTCGCTGGCAGCCAATTGCCGATCGCGCAGTCTCTT
TCGATGCCCGCCAGATGCAGACCTTTACGCTTGGCCTGCCGGAAACGCGAAACTTCCCGCTAAACATTTGGCAGAACTTT
TCCCGCCAGATCCAACGTGAGCAGGCGCATACGCTGATGTTAAATAGCGATCCGCAGGGCGAGCCACAGCTGCGCCAGCA
AATTGCGCATTACCTTAATTTTGAACGCGGCGCGAAGGTAGATGCCGGGCAGATTGTGATTGTCAGCGGCGCACGGCAGG
CGTTCTGGCTGTGCGGGCAACTGCTGGCAGAGGCCGGACAGTCGGTGGCGATGGAAAATCCAGGCTATCCCGGCGCGCGT
CAGGCGTTTTCTGCCGCACAGCTTAATCTTCTTCCCGTTGAAGTGGATGACGCCGGGATCCGGGTGGATAAACTGCCGCC
CGCGCAGCTGGTTTACGTCACGCCCTCGCACCAGTTTCCTTCCGGTCATTTGCTCACGCTGGCGCGGCGTCATGCCCTGA
TTGCCTGGGCGCAGGCGCACAATGCGTGGATTATCGAAGACGACTACGACAGCGAATTTCACTACACCAGCGCGCCCGTC
GCCTGTCTGCAAGGGTTAGACTGCGAGCAACGCACCCTGTATGTCGGCACTTTCAGCAAAACGCTCTATCCCGGCCTGCG
CATCGGTTATCTGGTGGTGCCGACGTCGCTGGCTGCGCACTTTGCCGCCGCGCGTAATTTGCTTGATGGCGAAACGCCTG
CGTTATCCCAACTAACGCTGGCGCGATTTATCGAGTCCGGTCATTTTGCCGCCCATATTCGCAACATGCGCAGTATGTAC
GCGGTGCGGCAGGCGAGCCTGGCAGAGGCTATTCATCAACACTTAAGTGAATGGGTCACGCCAGTGGTGACATCCGGTGG
ATTACAAATGCCCTGCTGGCTGCATGAAGGTATTGATGAGCAACAGACACTGAACGTCGCGCGCCGCGCCGGGTTAAACA
TCGCCGGAATGCGCCAGTTCTGGCTGACGCACCCCGCGCCCGCGGGCTGGCTGCTGGGATTCGCCGCCTTTACCCCCTAC
GAAATTGAACAGGGCGTCAAACGCCTGCGGGCTGCATTATGCGCTGAAAACGTGCACCCAGCCGGGTCATAA

Upstream 100 bases:

>100_bases
TGACATTGGAGACAATTATACTTCTTATCGCAGAATAATTCGTTTATGAGTAAAAATTATATTTCAGGACAAGAAGTTAT
GCTCGAGTCAAGCTAATGAA

Downstream 100 bases:

>100_bases
TCTCATACGGGATGGTGTCGCAGGCCGCCGCAACCTCTTCCAGCGTCTGGCCTGTGCCAATAAATTCCACTACATCGCCC
GCTGTCGGCGAGACAGCGCT

Product: GntR-family regulatory protein, with an aminotransferase domain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 503; Mature: 503

Protein sequence:

>503_residues
MLNVRNKNVLMNTGNFESIQIMIDAQEWRSLPLHLRLYQAFRQLVISGVLADGAKLPSARALAQQLGLSRDTVENAYSQL
HRDGFMARRQGAGSFASRQGIPHIQGQHAQPPSPGQVPALSARWQPIADRAVSFDARQMQTFTLGLPETRNFPLNIWQNF
SRQIQREQAHTLMLNSDPQGEPQLRQQIAHYLNFERGAKVDAGQIVIVSGARQAFWLCGQLLAEAGQSVAMENPGYPGAR
QAFSAAQLNLLPVEVDDAGIRVDKLPPAQLVYVTPSHQFPSGHLLTLARRHALIAWAQAHNAWIIEDDYDSEFHYTSAPV
ACLQGLDCEQRTLYVGTFSKTLYPGLRIGYLVVPTSLAAHFAAARNLLDGETPALSQLTLARFIESGHFAAHIRNMRSMY
AVRQASLAEAIHQHLSEWVTPVVTSGGLQMPCWLHEGIDEQQTLNVARRAGLNIAGMRQFWLTHPAPAGWLLGFAAFTPY
EIEQGVKRLRAALCAENVHPAGS

Sequences:

>Translated_503_residues
MLNVRNKNVLMNTGNFESIQIMIDAQEWRSLPLHLRLYQAFRQLVISGVLADGAKLPSARALAQQLGLSRDTVENAYSQL
HRDGFMARRQGAGSFASRQGIPHIQGQHAQPPSPGQVPALSARWQPIADRAVSFDARQMQTFTLGLPETRNFPLNIWQNF
SRQIQREQAHTLMLNSDPQGEPQLRQQIAHYLNFERGAKVDAGQIVIVSGARQAFWLCGQLLAEAGQSVAMENPGYPGAR
QAFSAAQLNLLPVEVDDAGIRVDKLPPAQLVYVTPSHQFPSGHLLTLARRHALIAWAQAHNAWIIEDDYDSEFHYTSAPV
ACLQGLDCEQRTLYVGTFSKTLYPGLRIGYLVVPTSLAAHFAAARNLLDGETPALSQLTLARFIESGHFAAHIRNMRSMY
AVRQASLAEAIHQHLSEWVTPVVTSGGLQMPCWLHEGIDEQQTLNVARRAGLNIAGMRQFWLTHPAPAGWLLGFAAFTPY
EIEQGVKRLRAALCAENVHPAGS
>Mature_503_residues
MLNVRNKNVLMNTGNFESIQIMIDAQEWRSLPLHLRLYQAFRQLVISGVLADGAKLPSARALAQQLGLSRDTVENAYSQL
HRDGFMARRQGAGSFASRQGIPHIQGQHAQPPSPGQVPALSARWQPIADRAVSFDARQMQTFTLGLPETRNFPLNIWQNF
SRQIQREQAHTLMLNSDPQGEPQLRQQIAHYLNFERGAKVDAGQIVIVSGARQAFWLCGQLLAEAGQSVAMENPGYPGAR
QAFSAAQLNLLPVEVDDAGIRVDKLPPAQLVYVTPSHQFPSGHLLTLARRHALIAWAQAHNAWIIEDDYDSEFHYTSAPV
ACLQGLDCEQRTLYVGTFSKTLYPGLRIGYLVVPTSLAAHFAAARNLLDGETPALSQLTLARFIESGHFAAHIRNMRSMY
AVRQASLAEAIHQHLSEWVTPVVTSGGLQMPCWLHEGIDEQQTLNVARRAGLNIAGMRQFWLTHPAPAGWLLGFAAFTPY
EIEQGVKRLRAALCAENVHPAGS

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=323, Percent_Identity=22.6006191950464, Blast_Score=85, Evalue=2e-16,
Organism=Homo sapiens, GI33469970, Length=323, Percent_Identity=22.6006191950464, Blast_Score=85, Evalue=2e-16,
Organism=Escherichia coli, GI1790797, Length=405, Percent_Identity=26.6666666666667, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1787710, Length=393, Percent_Identity=27.2264631043257, Blast_Score=124, Evalue=2e-29,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 55640; Mature: 55640

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNVRNKNVLMNTGNFESIQIMIDAQEWRSLPLHLRLYQAFRQLVISGVLADGAKLPSAR
CCCCCCCEEEEECCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH
ALAQQLGLSRDTVENAYSQLHRDGFMARRQGAGSFASRQGIPHIQGQHAQPPSPGQVPAL
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC
SARWQPIADRAVSFDARQMQTFTLGLPETRNFPLNIWQNFSRQIQREQAHTLMLNSDPQG
CCCCCHHHHHHHCCCHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCC
EPQLRQQIAHYLNFERGAKVDAGQIVIVSGARQAFWLCGQLLAEAGQSVAMENPGYPGAR
CHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCEEECCCCCCCCHH
QAFSAAQLNLLPVEVDDAGIRVDKLPPAQLVYVTPSHQFPSGHLLTLARRHALIAWAQAH
HHHHHHHEEEEEEEECCCCEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHEEEEECC
NAWIIEDDYDSEFHYTSAPVACLQGLDCEQRTLYVGTFSKTLYPGLRIGYLVVPTSLAAH
CEEEEECCCCCCCEECCCHHHHHCCCCCCCCEEEEEECHHHHCCCCEEEEEEECHHHHHH
FAAARNLLDGETPALSQLTLARFIESGHFAAHIRNMRSMYAVRQASLAEAIHQHLSEWVT
HHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PVVTSGGLQMPCWLHEGIDEQQTLNVARRAGLNIAGMRQFWLTHPAPAGWLLGFAAFTPY
HHHCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHCCHH
EIEQGVKRLRAALCAENVHPAGS
HHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLNVRNKNVLMNTGNFESIQIMIDAQEWRSLPLHLRLYQAFRQLVISGVLADGAKLPSAR
CCCCCCCEEEEECCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH
ALAQQLGLSRDTVENAYSQLHRDGFMARRQGAGSFASRQGIPHIQGQHAQPPSPGQVPAL
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC
SARWQPIADRAVSFDARQMQTFTLGLPETRNFPLNIWQNFSRQIQREQAHTLMLNSDPQG
CCCCCHHHHHHHCCCHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCC
EPQLRQQIAHYLNFERGAKVDAGQIVIVSGARQAFWLCGQLLAEAGQSVAMENPGYPGAR
CHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCEEECCCCCCCCHH
QAFSAAQLNLLPVEVDDAGIRVDKLPPAQLVYVTPSHQFPSGHLLTLARRHALIAWAQAH
HHHHHHHEEEEEEEECCCCEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHEEEEECC
NAWIIEDDYDSEFHYTSAPVACLQGLDCEQRTLYVGTFSKTLYPGLRIGYLVVPTSLAAH
CEEEEECCCCCCCEECCCHHHHHCCCCCCCCEEEEEECHHHHCCCCEEEEEEECHHHHHH
FAAARNLLDGETPALSQLTLARFIESGHFAAHIRNMRSMYAVRQASLAEAIHQHLSEWVT
HHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PVVTSGGLQMPCWLHEGIDEQQTLNVARRAGLNIAGMRQFWLTHPAPAGWLLGFAAFTPY
HHHCCCCCCCCHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHCCHH
EIEQGVKRLRAALCAENVHPAGS
HHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]