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The map label for this gene is yijO [H]

Identifier: 218551055

GI number: 218551055

Start: 3902121

End: 3902972

Strand: Direct

Name: yijO [H]

Synonym: EFER_3809

Alternate gene names: 218551055

Gene position: 3902121-3902972 (Clockwise)

Preceding gene: 218551054

Following gene: 218551061

Centisome position: 85.04

GC content: 52.7

Gene sequence:

>852_bases
ATGTATCACGACGTCAGCTATCTGCTCTCCCGCCTGATAAACGGCCCGCTGTCGCTGCGCCAGATTTACTTTGCCAGCAG
CAACGGTCCGGCGCCCGATCTTGCGTATCAGGTCGATTTTCCACGGCTGGAAATAGTGCTGGAAGGTGAATTTGTTGATA
CCGGCGCTGGCGCAACGTTAGTTCCCGGCGATGTGCTGTACGTTCCCGCTGGCGGCTGGAATTTCCCACAATGGCAAGCC
CCCGCGACCACCTTTAGCGTGCTGTTTGGCAAACAGCAACTCGGTTTCAGCGTCGTGCAATGGGATGGCAAACAGTATCA
AAATCTGGCGAAGCAACACGTCGCCCGACGCGGCCCGCGCATTGGTTCTTTTCTGCTACAAACGCTCAATGAAATGCAAA
TGCAGCCACAGGAGCAGCAAACAGCAAGGCTTATCGTCACCAGCCTGCTTAGCCACTGCCGCGATTTGCTCGGTAGCCAA
ATACAGACCGCCTCACGTAGCCAGGCACTATTTGAAGCTATTCGCGATTATATCGACGAACACTATGCCACCGCGCTTAC
CCGCGAATCTGTCGCACAGGCGTTCTATATTTCGCCAAATTACCTCTCGCACCTGTTTCAAAAAACGGGGGCCATTGGAT
TTAACGAATACCTGAATCACACGCGACTGGAACACGCTAAGACGTTATTGAAAGGCTATGACCTGAAGGTAAAAGAAGTG
GCGCACGCCTGCGGCTTTGTTGACAGCAACTACTTCTGCCGTCTGTTTCGTAAAAACACCGAACGCTCGCCGTCGGAATA
TCGTCGGCAATACCATAGCCAACTGACAGAAAAACCGACTACTCCAGAATAA

Upstream 100 bases:

>100_bases
GCAATGTTTACATCGAACTCCCATCAGGCCACACTTTTCAGGTGGCCTTTTTTCATAATGCCAGTTACTGTTTTCCCGTC
TACATACCTAAGGGAATAAC

Downstream 100 bases:

>100_bases
GATGGGTTTGCTGCGGCGCAGAAAGCACTTTACGCACCGCGCTCATCACCCGCTGCGGCTCACGCAGGAACGCGTAGATG
CTGCATTGCACGTAGCGGCA

Product: DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MYHDVSYLLSRLINGPLSLRQIYFASSNGPAPDLAYQVDFPRLEIVLEGEFVDTGAGATLVPGDVLYVPAGGWNFPQWQA
PATTFSVLFGKQQLGFSVVQWDGKQYQNLAKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVTSLLSHCRDLLGSQ
IQTASRSQALFEAIRDYIDEHYATALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEV
AHACGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE

Sequences:

>Translated_283_residues
MYHDVSYLLSRLINGPLSLRQIYFASSNGPAPDLAYQVDFPRLEIVLEGEFVDTGAGATLVPGDVLYVPAGGWNFPQWQA
PATTFSVLFGKQQLGFSVVQWDGKQYQNLAKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVTSLLSHCRDLLGSQ
IQTASRSQALFEAIRDYIDEHYATALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEV
AHACGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE
>Mature_283_residues
MYHDVSYLLSRLINGPLSLRQIYFASSNGPAPDLAYQVDFPRLEIVLEGEFVDTGAGATLVPGDVLYVPAGGWNFPQWQA
PATTFSVLFGKQQLGFSVVQWDGKQYQNLAKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVTSLLSHCRDLLGSQ
IQTASRSQALFEAIRDYIDEHYATALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEV
AHACGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=283, Percent_Identity=98.5865724381625, Blast_Score=583, Evalue=1e-168,
Organism=Escherichia coli, GI1788725, Length=270, Percent_Identity=35.5555555555556, Blast_Score=160, Evalue=1e-40,
Organism=Escherichia coli, GI1790339, Length=160, Percent_Identity=25.625, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32147; Mature: 32147

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYHDVSYLLSRLINGPLSLRQIYFASSNGPAPDLAYQVDFPRLEIVLEGEFVDTGAGATL
CCCCHHHHHHHHHCCCHHHHHEEEECCCCCCCCCEEEECCCEEEEEEECCEEECCCCCEE
VPGDVLYVPAGGWNFPQWQAPATTFSVLFGKQQLGFSVVQWDGKQYQNLAKQHVARRGPR
CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHCCCH
IGSFLLQTLNEMQMQPQEQQTARLIVTSLLSHCRDLLGSQIQTASRSQALFEAIRDYIDE
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HYATALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
AHACGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE
HHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MYHDVSYLLSRLINGPLSLRQIYFASSNGPAPDLAYQVDFPRLEIVLEGEFVDTGAGATL
CCCCHHHHHHHHHCCCHHHHHEEEECCCCCCCCCEEEECCCEEEEEEECCEEECCCCCEE
VPGDVLYVPAGGWNFPQWQAPATTFSVLFGKQQLGFSVVQWDGKQYQNLAKQHVARRGPR
CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHCCCH
IGSFLLQTLNEMQMQPQEQQTARLIVTSLLSHCRDLLGSQIQTASRSQALFEAIRDYIDE
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HYATALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEV
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
AHACGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLTEKPTTPE
HHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]