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The map label for this gene is yifB [H]

Identifier: 218551007

GI number: 218551007

Start: 3832870

End: 3834420

Strand: Direct

Name: yifB [H]

Synonym: EFER_3736

Alternate gene names: 218551007

Gene position: 3832870-3834420 (Clockwise)

Preceding gene: 218551000

Following gene: 218551009

Centisome position: 83.53

GC content: 50.74

Gene sequence:

>1551_bases
ATGCACATAATGGTGACTCAAGGAGGGCTTATGTCACTGTCAATTGTTCATACCCGCGCAGCCCTGGGAGTAAATGCGCC
CCCAATCACTGTTGAGGTACATATCAGTAAAGGTCTACCAGGCTTAACGATGGTGGGCTTACCAGAAACAACGGTAAAAG
AAGCTCGCGATCGCGTGCGCAGCGCCATTATCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATCAACCTTGCT
CCAGCCGATCTGCCAAAAGAAGGGGGACGATATGATTTGCCTATCGCTATTGCGTTACTGACGGCCTCAGAACAGCTTAC
AGCCAATAAGTTAGATGAATATGAATTAGTCGGAGAACTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCCGGCGCAATCT
CCAGTGCAACTGAAGCTATTAAGTCGGGCAGAAAAATTATCGTCGCGAAAGATAACGAAGATGAAGTGGGGCTAATTAAC
GGTGAAGGATGCCTGATAGCCGATCATCTGCAGGCTGTCTGCGCGTTTCTGGAAGGTAAGCACGCTCTCGAACGCCCGAA
ACCAACTAATGCAGTATCCCGGGCGCTACAACATGATCTCAGTGATGTTGTCGGTCAGGAGCAAGGAAAGCGAGGACTGG
AAATTACCGCCGCTGGCGGGCACAACCTTTTACTGATTGGACCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATT
AATGGCCTGTTGCCAGATTTAAGCAATGAAGAGGCACTGGAGAGCGCTGCGATATTAAGTCTGGTAAATGCTGAATCAGT
ACAAAAACAATGGCGGCAGCGCCCGTTCCGCTCACCTCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGTGCAA
TTCCAGGGCCTGGTGAAATTTCGCTGGCGCATAACGGCGTGCTTTTTCTTGATGAGCTACCTGAATTTGAACGACGTACA
CTGGATGCCTTGCGGGAGCCGATTGAATCCGGGCAGATCCATCTTTCACGCACGCGAGCAAAAATAACCTACCCGGCCCG
TTTCCAGCTTGTTGCGGCGATGAACCCCAGCCCTACTGGACATTATCAGGGAAACCATAACCGCTGCACACCAGAGCAAA
CGCTGCGTTATCTCAACCGACTCTCTGGTCCCTTTCTTGACCGATTCGACCTCTCACTGGAGATCCCACTACCGCCACCC
GGTATTTTGAGTAAAGCGGTTGTTCAGGGGGAAAACAGCGCCACCGTTAAACAACGCGTAATGGCCGCCAGAGAGCGCCA
ATTTAAGCGGCAGAATAAACTGAATGCCTGGCTGGATAGTCCGGAAATACGCCAATTCTGCAAGCTTGAGAGCGAAGACG
CCCAGTGGCTGGAAGAAACGCTGCTTCATCTGGGGTTATCGATTCGTGCCTGGCAACGATTACTGAAGGTATCGAGAACT
ATTGCTGATATTGATCAGTCTGACGTCATCACACGCCAGCATTTACAGGAGGCAGTTAGCTATCGAGCTATCGATCGCTT
GCTTATTCATTTACAAAAACTACTGACATAA

Upstream 100 bases:

>100_bases
GCATCATTCCACCGCCAGAACAACTCAACTTCACTTGCACAAATAAACAGGAATCAGCCACTAAAATTCACGAATTAGCG
GGCTACAGCAGCGATATCTT

Downstream 100 bases:

>100_bases
AAAAAGGGCATTTCGCCCTTTTTATTAATCGTCGGAATCGGTGTAGTCTTCAGCACCTTCAACCTGCGGTTTACCACCGG
AAAGGGTGTGAAAACGTTTT

Product: ATP-dependent protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 516; Mature: 516

Protein sequence:

>516_residues
MHIMVTQGGLMSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLA
PADLPKEGGRYDLPIAIALLTASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLIN
GEGCLIADHLQAVCAFLEGKHALERPKPTNAVSRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRI
NGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRT
LDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPP
GILSKAVVQGENSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAQWLEETLLHLGLSIRAWQRLLKVSRT
IADIDQSDVITRQHLQEAVSYRAIDRLLIHLQKLLT

Sequences:

>Translated_516_residues
MHIMVTQGGLMSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLA
PADLPKEGGRYDLPIAIALLTASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLIN
GEGCLIADHLQAVCAFLEGKHALERPKPTNAVSRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRI
NGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRT
LDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPP
GILSKAVVQGENSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAQWLEETLLHLGLSIRAWQRLLKVSRT
IADIDQSDVITRQHLQEAVSYRAIDRLLIHLQKLLT
>Mature_516_residues
MHIMVTQGGLMSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLA
PADLPKEGGRYDLPIAIALLTASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLIN
GEGCLIADHLQAVCAFLEGKHALERPKPTNAVSRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRI
NGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRT
LDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPP
GILSKAVVQGENSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAQWLEETLLHLGLSIRAWQRLLKVSRT
IADIDQSDVITRQHLQEAVSYRAIDRLLIHLQKLLT

Specific function: Unknown

COG id: COG0606

COG function: function code O; Predicted ATPase with chaperone activity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Mg-chelatase subunits D/I family. ComM subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693202, Length=506, Percent_Identity=97.8260869565217, Blast_Score=1009, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR004482
- InterPro:   IPR000523
- InterPro:   IPR020568 [H]

Pfam domain/function: PF01078 Mg_chelatase [H]

EC number: NA

Molecular weight: Translated: 56329; Mature: 56329

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIMVTQGGLMSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVR
CEEEEECCCCEEEEEHHHHHHCCCCCCCEEEEEEECCCCCCCEEECCCCHHHHHHHHHHH
SAIINSGYEYPAKKITINLAPADLPKEGGRYDLPIAIALLTASEQLTANKLDEYELVGEL
HHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCHHHHHHHHH
ALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHLQAVCAFLEGK
HHHHHHCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCEEHHHHHHHHHHHHCH
HALERPKPTNAVSRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRI
HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHH
NGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEI
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCE
SLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTG
EEECCCEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECEEEEECCCEEEEEEECCCCCCC
HYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKAVVQGENSATVKQRV
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHCCCCCHHHHHHH
MAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAQWLEETLLHLGLSIRAWQRLLKVSRT
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
IADIDQSDVITRQHLQEAVSYRAIDRLLIHLQKLLT
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MHIMVTQGGLMSLSIVHTRAALGVNAPPITVEVHISKGLPGLTMVGLPETTVKEARDRVR
CEEEEECCCCEEEEEHHHHHHCCCCCCCEEEEEEECCCCCCCEEECCCCHHHHHHHHHHH
SAIINSGYEYPAKKITINLAPADLPKEGGRYDLPIAIALLTASEQLTANKLDEYELVGEL
HHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCHHHHHHHHH
ALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHLQAVCAFLEGK
HHHHHHCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEECCCCCEEHHHHHHHHHHHHCH
HALERPKPTNAVSRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRI
HHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHH
NGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEI
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCE
SLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTG
EEECCCEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECEEEEECCCEEEEEEECCCCCCC
HYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKAVVQGENSATVKQRV
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHCCCCCHHHHHHH
MAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAQWLEETLLHLGLSIRAWQRLLKVSRT
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
IADIDQSDVITRQHLQEAVSYRAIDRLLIHLQKLLT
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1995430; 1379743; 9278503 [H]