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The map label for this gene is hemD [H]

Identifier: 218550974

GI number: 218550974

Start: 3793393

End: 3794133

Strand: Direct

Name: hemD [H]

Synonym: EFER_3701

Alternate gene names: 218550974

Gene position: 3793393-3794133 (Clockwise)

Preceding gene: 218550973

Following gene: 218550975

Centisome position: 82.67

GC content: 53.58

Gene sequence:

>741_bases
ATGAGTATTCTGGTCACCCGCCCGTCTCCCGCCGGGGAAGAATTAGTGAGCCGTCTGCGCACACTGGGCAAGGTGGCCTG
GAGCTTTCCACTGATTGAATTTACCCCTGGCCGGGAGCTGCCTACGCTCTCCCGCCATCTGGAAACACTTGGCGATAACG
ATCTGCTCTTTGCACTTTCTCAACATGCAGTGTCATTCGCCCATGCGCAGTTGCAACAGCAGGGGCTAAACTGGCCATCA
CTTCCGCATTATTTCGCTATTGGCCGTACTACCGCTCTCGCCCTGCACACCGTAAGCGGACATAAGATTCGCTATCCACA
AGATCGGGAAATCAGCGAAGTCTTGCTACAATTACCGGAATTACAAAGTATTGCGGGAAAACGCGCACTGATTTTGCGCG
GTAACGGCGGCCGTGAATTGATCGGTCAGACGCTGACATCACGTGGTGCCGACGTTACTTTTTGTGAATGTTATCAACGC
AGTGCGAAGCATTACGATGGTGCGGAAGAAGCAATGCGCTGGCAGTCTCGCGGCGTAACAACCGTCGTTGTAACCAGCGG
TGAAATGCTGCAACAACTCTGGTCGCTGATTCCACAGTGGTATCGTGAGCACTGGTTACTACGCTGTCGGCTACTGGTCG
TCAGTGAGCGTCTGGCGATCCTTGCCCAGGAACTGGGTTGGCAAGACATTCAGATCGCTGATAACGCCGACAACGATGCG
CTACTACGCGCATTACAATAA

Upstream 100 bases:

>100_bases
CGCAGGACGCCGAAAAAATGGGTATTTCGCTGGCAGAAGAACTGCTCAATAACGGCGCACGGGCGATTCTCGCTGATGTA
TATAACGGAGATGCCCCCGT

Downstream 100 bases:

>100_bases
CTCTCATAATGGGAAGCCATAATGACGGAACAAGAAAAATCCTCCGCCGTGGTTGAAGAAACCAGGGAGAACGTGGATAC
CCCACCACAGCCAGTAGTTG

Product: uroporphyrinogen-III synthase

Products: NA

Alternate protein names: UROS; Hydroxymethylbilane hydrolyase [cyclizing]; Uroporphyrinogen-III cosynthase [H]

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MSILVTRPSPAGEELVSRLRTLGKVAWSFPLIEFTPGRELPTLSRHLETLGDNDLLFALSQHAVSFAHAQLQQQGLNWPS
LPHYFAIGRTTALALHTVSGHKIRYPQDREISEVLLQLPELQSIAGKRALILRGNGGRELIGQTLTSRGADVTFCECYQR
SAKHYDGAEEAMRWQSRGVTTVVVTSGEMLQQLWSLIPQWYREHWLLRCRLLVVSERLAILAQELGWQDIQIADNADNDA
LLRALQ

Sequences:

>Translated_246_residues
MSILVTRPSPAGEELVSRLRTLGKVAWSFPLIEFTPGRELPTLSRHLETLGDNDLLFALSQHAVSFAHAQLQQQGLNWPS
LPHYFAIGRTTALALHTVSGHKIRYPQDREISEVLLQLPELQSIAGKRALILRGNGGRELIGQTLTSRGADVTFCECYQR
SAKHYDGAEEAMRWQSRGVTTVVVTSGEMLQQLWSLIPQWYREHWLLRCRLLVVSERLAILAQELGWQDIQIADNADNDA
LLRALQ
>Mature_245_residues
SILVTRPSPAGEELVSRLRTLGKVAWSFPLIEFTPGRELPTLSRHLETLGDNDLLFALSQHAVSFAHAQLQQQGLNWPSL
PHYFAIGRTTALALHTVSGHKIRYPQDREISEVLLQLPELQSIAGKRALILRGNGGRELIGQTLTSRGADVTFCECYQRS
AKHYDGAEEAMRWQSRGVTTVVVTSGEMLQQLWSLIPQWYREHWLLRCRLLVVSERLAILAQELGWQDIQIADNADNDAL
LRALQ

Specific function: Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III [H]

COG id: COG1587

COG function: function code H; Uroporphyrinogen-III synthase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the uroporphyrinogen-III synthase family [H]

Homologues:

Organism=Escherichia coli, GI1790236, Length=246, Percent_Identity=84.5528455284553, Blast_Score=425, Evalue=1e-120,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003754 [H]

Pfam domain/function: PF02602 HEM4 [H]

EC number: =4.2.1.75 [H]

Molecular weight: Translated: 27712; Mature: 27581

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSILVTRPSPAGEELVSRLRTLGKVAWSFPLIEFTPGRELPTLSRHLETLGDNDLLFALS
CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCHHHHHHH
QHAVSFAHAQLQQQGLNWPSLPHYFAIGRTTALALHTVSGHKIRYPQDREISEVLLQLPE
HHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHEEEEEECCCCEECCCCCCCHHHHHHHCCH
LQSIAGKRALILRGNGGRELIGQTLTSRGADVTFCECYQRSAKHYDGAEEAMRWQSRGVT
HHHHCCCEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCE
TVVVTSGEMLQQLWSLIPQWYREHWLLRCRLLVVSERLAILAQELGWQDIQIADNADNDA
EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHH
LLRALQ
HHHHCC
>Mature Secondary Structure 
SILVTRPSPAGEELVSRLRTLGKVAWSFPLIEFTPGRELPTLSRHLETLGDNDLLFALS
EEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCHHHHHHH
QHAVSFAHAQLQQQGLNWPSLPHYFAIGRTTALALHTVSGHKIRYPQDREISEVLLQLPE
HHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHEEEEEECCCCEECCCCCCCHHHHHHHCCH
LQSIAGKRALILRGNGGRELIGQTLTSRGADVTFCECYQRSAKHYDGAEEAMRWQSRGVT
HHHHCCCEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCE
TVVVTSGEMLQQLWSLIPQWYREHWLLRCRLLVVSERLAILAQELGWQDIQIADNADNDA
EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHH
LLRALQ
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]