Click here to switch to the map view.

The map label for this gene is dgoK [H]

Identifier: 218550924

GI number: 218550924

Start: 3738476

End: 3739480

Strand: Direct

Name: dgoK [H]

Synonym: EFER_3650

Alternate gene names: 218550924

Gene position: 3738476-3739480 (Clockwise)

Preceding gene: 218550923

Following gene: 218550925

Centisome position: 81.47

GC content: 52.74

Gene sequence:

>1005_bases
ATGTCGGGAAACACCTCATTTATTGCCCTGGACTGGGGAACGTCATCGCTTCGGGCATGGCGTTTTGGTGACTCACCAAA
TCCACAAGAAAAACGTGAATTCCCGTGGGGGATCATGAAATTACCCTCCCAGGCAGCAACACGTGAGGACGCTTTCCACG
ATACGTTTTTACGTGTCTGCGGCGACTGGCTGGCACAATCCCCATGCCCGGTTCTGGCTTGCGGCATGATCGGCAGTGCG
CAAGGGTGGCAACCAGCAGCTTATTTACCTTGCCCGGTCACTCTTGAGGGTCTGGCAAAGCAGTTGACGCCTGTTATCCA
CCAGCAGCAGACAATGCTGCACATCATTCCTGGCGTGATTAAAGAAGGTGAAATGCCCGAAGTGATGCGTGGTGAAGAGA
CACAAATCTTCGGTGCTATCTCGATGGAACCGGCCCTGCACAACGCAATCCATCAGGGTATGCCTGTGCTGATTGGCTTA
CCTGGCACACATGCGAAATGGGCTGTAGTTGAAAACAACACCATTACCGATTTCCGAACCTTTATGACTGGCGAGTTATT
TGATGTTTTATCCCGCCATTCGATTCTCGGTGCCACCATGCGTTCGGGAGATGAACCGCACTGGGATGCCTTCGCCCACG
GGCTGACAGCAGCACAAGAGCATCATCAGACCGGATTATTATCGACGCTATTTTCGACCCGTTCGCGCCTGCTGACCAGT
AATCTTACGCCGTCCTCACAGGGGGATTATCTTTCAGGATTACTGATAGGCCATGAATTATGCGGTCTGGCATCCAGTTT
GCTACGTGATTTACCCGCCACAACACCGATCGCCTTAATCGGTAGCGCCACTCTGAACAGCCGCTATTCACAAGCATTCA
GCCACGTTTTTCCCGACAGACAGCTACACGCCATTCCTAATGCCACTGAACAGGGGTTATGGCGAATCGCCCACGCTGCC
GGGCTACTCTCCACCAACGCCAGGGAATGTACTCATGCCATTTAA

Upstream 100 bases:

>100_bases
CACCTTACGTCAAATCCTGTGCAGAAGAGATATCCGCTGAACTGGGCTGGGGTAAGCACGTCCACAAAAATAAATAAACC
ATGACTAAAGGAAACGGCTA

Downstream 100 bases:

>100_bases
TACGCTTTTGCAAAAAACCGGGTTAGTCGCCATTTTACGCGGCGTGAAACCGGATGAGATTGTCGCCATCGGTGAAAAGC
TGTATGCCGCTGGATTTCGC

Product: acidic carbohydrate kinase

Products: NA

Alternate protein names: 2-keto-3-deoxy-galactonokinase; 2-oxo-3-deoxygalactonate kinase [H]

Number of amino acids: Translated: 334; Mature: 333

Protein sequence:

>334_residues
MSGNTSFIALDWGTSSLRAWRFGDSPNPQEKREFPWGIMKLPSQAATREDAFHDTFLRVCGDWLAQSPCPVLACGMIGSA
QGWQPAAYLPCPVTLEGLAKQLTPVIHQQQTMLHIIPGVIKEGEMPEVMRGEETQIFGAISMEPALHNAIHQGMPVLIGL
PGTHAKWAVVENNTITDFRTFMTGELFDVLSRHSILGATMRSGDEPHWDAFAHGLTAAQEHHQTGLLSTLFSTRSRLLTS
NLTPSSQGDYLSGLLIGHELCGLASSLLRDLPATTPIALIGSATLNSRYSQAFSHVFPDRQLHAIPNATEQGLWRIAHAA
GLLSTNARECTHAI

Sequences:

>Translated_334_residues
MSGNTSFIALDWGTSSLRAWRFGDSPNPQEKREFPWGIMKLPSQAATREDAFHDTFLRVCGDWLAQSPCPVLACGMIGSA
QGWQPAAYLPCPVTLEGLAKQLTPVIHQQQTMLHIIPGVIKEGEMPEVMRGEETQIFGAISMEPALHNAIHQGMPVLIGL
PGTHAKWAVVENNTITDFRTFMTGELFDVLSRHSILGATMRSGDEPHWDAFAHGLTAAQEHHQTGLLSTLFSTRSRLLTS
NLTPSSQGDYLSGLLIGHELCGLASSLLRDLPATTPIALIGSATLNSRYSQAFSHVFPDRQLHAIPNATEQGLWRIAHAA
GLLSTNARECTHAI
>Mature_333_residues
SGNTSFIALDWGTSSLRAWRFGDSPNPQEKREFPWGIMKLPSQAATREDAFHDTFLRVCGDWLAQSPCPVLACGMIGSAQ
GWQPAAYLPCPVTLEGLAKQLTPVIHQQQTMLHIIPGVIKEGEMPEVMRGEETQIFGAISMEPALHNAIHQGMPVLIGLP
GTHAKWAVVENNTITDFRTFMTGELFDVLSRHSILGATMRSGDEPHWDAFAHGLTAAQEHHQTGLLSTLFSTRSRLLTSN
LTPSSQGDYLSGLLIGHELCGLASSLLRDLPATTPIALIGSATLNSRYSQAFSHVFPDRQLHAIPNATEQGLWRIAHAAG
LLSTNARECTHAI

Specific function: D-galactonate degradation; second step. [C]

COG id: COG3734

COG function: function code G; 2-keto-3-deoxy-galactonokinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790128, Length=316, Percent_Identity=34.4936708860759, Blast_Score=138, Evalue=6e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007729 [H]

Pfam domain/function: PF05035 DGOK [H]

EC number: =2.7.1.58 [H]

Molecular weight: Translated: 36373; Mature: 36242

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGNTSFIALDWGTSSLRAWRFGDSPNPQEKREFPWGIMKLPSQAATREDAFHDTFLRVC
CCCCCCEEEEECCCCCCEEEECCCCCCCCHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHH
GDWLAQSPCPVLACGMIGSAQGWQPAAYLPCPVTLEGLAKQLTPVIHQQQTMLHIIPGVI
HHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KEGEMPEVMRGEETQIFGAISMEPALHNAIHQGMPVLIGLPGTHAKWAVVENNTITDFRT
CCCCCCHHHCCCCCEEEEEEECCHHHHHHHHCCCCEEEECCCCCCEEEEEECCCHHHHHH
FMTGELFDVLSRHSILGATMRSGDEPHWDAFAHGLTAAQEHHQTGLLSTLFSTRSRLLTS
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NLTPSSQGDYLSGLLIGHELCGLASSLLRDLPATTPIALIGSATLNSRYSQAFSHVFPDR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHHCCCC
QLHAIPNATEQGLWRIAHAAGLLSTNARECTHAI
CEECCCCCHHHHHHHHHHHHHHHCCCHHHHHCCC
>Mature Secondary Structure 
SGNTSFIALDWGTSSLRAWRFGDSPNPQEKREFPWGIMKLPSQAATREDAFHDTFLRVC
CCCCCEEEEECCCCCCEEEECCCCCCCCHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHH
GDWLAQSPCPVLACGMIGSAQGWQPAAYLPCPVTLEGLAKQLTPVIHQQQTMLHIIPGVI
HHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KEGEMPEVMRGEETQIFGAISMEPALHNAIHQGMPVLIGLPGTHAKWAVVENNTITDFRT
CCCCCCHHHCCCCCEEEEEEECCHHHHHHHHCCCCEEEECCCCCCEEEEEECCCHHHHHH
FMTGELFDVLSRHSILGATMRSGDEPHWDAFAHGLTAAQEHHQTGLLSTLFSTRSRLLTS
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NLTPSSQGDYLSGLLIGHELCGLASSLLRDLPATTPIALIGSATLNSRYSQAFSHVFPDR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHHCCCC
QLHAIPNATEQGLWRIAHAAGLLSTNARECTHAI
CEECCCCCHHHHHHHHHHHHHHHCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]