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The map label for this gene is yibQ [H]

Identifier: 218550892

GI number: 218550892

Start: 3697364

End: 3698320

Strand: Direct

Name: yibQ [H]

Synonym: EFER_3608

Alternate gene names: 218550892

Gene position: 3697364-3698320 (Clockwise)

Preceding gene: 218550891

Following gene: 218550896

Centisome position: 80.58

GC content: 53.19

Gene sequence:

>957_bases
TTGTTTCCATTTCGTCGTAACATTCTTTCACTTGCCGCTCTGTTGGCGCTCTCCTCCCCCGTAATTGCTGGCAAACTTGC
CATCGTCATTGATGATTTTGGGTATCGCCCGCACAACGAAAACCAGGTGCTGGCGATGCCCTCCGCTATCTCCGTCGCTG
TATTACCCGATTCACCGCACGCCAGAGAGATGGCGACCAAAGCGCATAACAGCGGTCACGAAGTGTTGATTCATCTGCCG
ATGGCACCGTTGAGTAAACAGCCGCTGGAGAAAAATACGCTGCGCCCGGAGATGAGCAGCGACGAAATTGAGCGCATTAT
TCGTAGTGCGGTCAATAACGTGCCCTATGCCGTGGGGATCAACAACCACATGGGTAGCAAGATGACCTCTAACCTGTTTG
GTATGCAGAAAGTGATGCAGGCGCTGGAGCGTTACAATCTTTACTTCCTCGACAGCGTAACCATCGGTAATACCCAGGCG
ATGCGCGCCGCGCAAGGTACTGGCGTGAAGGTTATTAAACGGAAGGTGTTCCTCGACGATTCGCAAAATGAAGCAGACAT
CCGTGTGCAGTTCAATCGCGCAATTGACCTGGCGCGTCGCAACGGTTCAACCATTGCCATTGGGCATCCTCACCCTTCAA
CGGTACGCGTGCTACAACAGATGGTTTATAACCTGCCGCCAGACATTACGCTGGTGAAAGCCAGCAGCTTGCTGAATGAA
CCGCAGGTTGATACGTCTACACCGCCGAAAAACACTGTGCCCGACGCACCGCGTAATCCGTTCCGTGGCGTGAAGCTCTG
CAAACCGAAGAAGCCGCTGGAGCCGGTTTATGCTGACCGATTCTTTAGCGTGCTGAGCGAAAGCATCAGTCAGAGTACGC
TGGTGAACTACATCCGCAATCAATGGCAAGGCTGGGGGAGGACACCCGCCAATACCGCAAACGCTAATTCAGATTAA

Upstream 100 bases:

>100_bases
GGTGGGCAGCAGTGGTGGTCAGGGCAGACCTTCACTCTATTTTGAGATTCGTCGCCAGGGTCAGGCCGTCAATCCACAGC
CGTGGTTGGGAAGATAAGTT

Downstream 100 bases:

>100_bases
GCGCTTTGCGTGCATTTTGTTGGTGCGACAATGTTTTGTCGCGCCATTGCCACAGACGCAAAGACCACAGCAAGACCTGA
TAACCGACCTTAGCGCTGCG

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MFPFRRNILSLAALLALSSPVIAGKLAIVIDDFGYRPHNENQVLAMPSAISVAVLPDSPHAREMATKAHNSGHEVLIHLP
MAPLSKQPLEKNTLRPEMSSDEIERIIRSAVNNVPYAVGINNHMGSKMTSNLFGMQKVMQALERYNLYFLDSVTIGNTQA
MRAAQGTGVKVIKRKVFLDDSQNEADIRVQFNRAIDLARRNGSTIAIGHPHPSTVRVLQQMVYNLPPDITLVKASSLLNE
PQVDTSTPPKNTVPDAPRNPFRGVKLCKPKKPLEPVYADRFFSVLSESISQSTLVNYIRNQWQGWGRTPANTANANSD

Sequences:

>Translated_318_residues
MFPFRRNILSLAALLALSSPVIAGKLAIVIDDFGYRPHNENQVLAMPSAISVAVLPDSPHAREMATKAHNSGHEVLIHLP
MAPLSKQPLEKNTLRPEMSSDEIERIIRSAVNNVPYAVGINNHMGSKMTSNLFGMQKVMQALERYNLYFLDSVTIGNTQA
MRAAQGTGVKVIKRKVFLDDSQNEADIRVQFNRAIDLARRNGSTIAIGHPHPSTVRVLQQMVYNLPPDITLVKASSLLNE
PQVDTSTPPKNTVPDAPRNPFRGVKLCKPKKPLEPVYADRFFSVLSESISQSTLVNYIRNQWQGWGRTPANTANANSD
>Mature_318_residues
MFPFRRNILSLAALLALSSPVIAGKLAIVIDDFGYRPHNENQVLAMPSAISVAVLPDSPHAREMATKAHNSGHEVLIHLP
MAPLSKQPLEKNTLRPEMSSDEIERIIRSAVNNVPYAVGINNHMGSKMTSNLFGMQKVMQALERYNLYFLDSVTIGNTQA
MRAAQGTGVKVIKRKVFLDDSQNEADIRVQFNRAIDLARRNGSTIAIGHPHPSTVRVLQQMVYNLPPDITLVKASSLLNE
PQVDTSTPPKNTVPDAPRNPFRGVKLCKPKKPLEPVYADRFFSVLSESISQSTLVNYIRNQWQGWGRTPANTANANSD

Specific function: Unknown

COG id: COG2861

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0755 [H]

Homologues:

Organism=Escherichia coli, GI87082298, Length=309, Percent_Identity=94.8220064724919, Blast_Score=598, Evalue=1e-172,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006837
- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF04748 Polysacc_deac_2 [H]

EC number: NA

Molecular weight: Translated: 35182; Mature: 35182

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPFRRNILSLAALLALSSPVIAGKLAIVIDDFGYRPHNENQVLAMPSAISVAVLPDSPH
CCCHHHHHHHHHHHHHHCCCCHHCEEEEEEECCCCCCCCCCEEEEECCEEEEEEECCCCC
AREMATKAHNSGHEVLIHLPMAPLSKQPLEKNTLRPEMSSDEIERIIRSAVNNVPYAVGI
HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC
NNHMGSKMTSNLFGMQKVMQALERYNLYFLDSVTIGNTQAMRAAQGTGVKVIKRKVFLDD
CCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCHHHHHHHCCCCHHHHHHHHEECC
SQNEADIRVQFNRAIDLARRNGSTIAIGHPHPSTVRVLQQMVYNLPPDITLVKASSLLNE
CCCCCEEEEEEHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEHHHHCCC
PQVDTSTPPKNTVPDAPRNPFRGVKLCKPKKPLEPVYADRFFSVLSESISQSTLVNYIRN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QWQGWGRTPANTANANSD
HHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFPFRRNILSLAALLALSSPVIAGKLAIVIDDFGYRPHNENQVLAMPSAISVAVLPDSPH
CCCHHHHHHHHHHHHHHCCCCHHCEEEEEEECCCCCCCCCCEEEEECCEEEEEEECCCCC
AREMATKAHNSGHEVLIHLPMAPLSKQPLEKNTLRPEMSSDEIERIIRSAVNNVPYAVGI
HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEC
NNHMGSKMTSNLFGMQKVMQALERYNLYFLDSVTIGNTQAMRAAQGTGVKVIKRKVFLDD
CCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCHHHHHHHCCCCHHHHHHHHEECC
SQNEADIRVQFNRAIDLARRNGSTIAIGHPHPSTVRVLQQMVYNLPPDITLVKASSLLNE
CCCCCEEEEEEHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEHHHHCCC
PQVDTSTPPKNTVPDAPRNPFRGVKLCKPKKPLEPVYADRFFSVLSESISQSTLVNYIRN
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QWQGWGRTPANTANANSD
HHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]