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The map label for this gene is yhjD [H]

Identifier: 218550794

GI number: 218550794

Start: 3580564

End: 3581619

Strand: Direct

Name: yhjD [H]

Synonym: EFER_3505

Alternate gene names: 218550794

Gene position: 3580564-3581619 (Clockwise)

Preceding gene: 218550793

Following gene: 218550795

Centisome position: 78.03

GC content: 48.39

Gene sequence:

>1056_bases
ATGAGCTACAAAAGGAACAACAACCTGATGACGCAGGAAAATGATCTAAAACGTCCGACTCAGGAACTGGAACATAAGCC
GATTCACCCCGTGCAGAACGAAGCGCACTACGAAAATGAGGCGAGCAGTAAAGCCGGTGAAACGCTGAAAATATTGACTT
CCACGGCAGAAAAAATTCAGCGCCAGCCAACCATCGCCCATCTAATCCGTGCAACTGAACGTTTTAACGATCGCCTTGGA
AATCAGTTCGGTGCGGCGATCACCTATTTCTCATTTTTATCGATGATCCCCATTTTGATGGTGTCATTTGCAGCGGCAGG
TTTTGTCCTCGCTTCTCACCCCATGCTGTTACAGGATATTTTTAATAAAATTCTGCTTAACATCAGTGATCCTGCCCTTG
CCGCCACATTGAAAAATACCATTAATACCGCCGTGCAACAGCGTACGACTGTTGGTCTGGTGGGGCTGGCTGTCGCACTT
TATTCGGGTATTAACTGGATGGGTAATCTGCGTGAGGCCATCCGTGCGCAGTCACGGGATGTCTGGGAACGTACACCGCA
GGACCAGGAGAAGTTTTGGCTGAAGTACCTGCGTGACTTTATCTCATTAATTGGCTTGCTGATTGCTTTAATCGTGACAC
TGTCCATCACGTCAATCGCCGGTTCTGCGCAGCAATTGATCATTAACACACTGCATCTCAACAGTATTGAGTGGCTGAAA
CCGACATGGCGCTTAATTGGTCTGGCTATTTCGATTTTTGCCAATTATCTGCTTTTCTTCTGGATTTTCTGGCGCCTTCC
ACGCCATCGCCCACGTCGCAGAGCGTTGATCCGTGGAACATTTATTGCCGCCATTGGTTTTGAAGTGATCAAAATTGTGA
TGACTTACACTCTGCCATCGCTGATGAAATCCCCCTCCGGTGCCGCCTTTGGTTCGGTACTCGGTCTGATGGCGTTCTTC
TACTTCTTTGCCCGCCTGACACTTTTCTGTGCGGCATGGATTGCTACCGCGCAATATAAAGACGATCCCCGAATGCCAGG
CAAAAACCACGCATAA

Upstream 100 bases:

>100_bases
CATCACCGCAATCTTTCCCGTCGTGTACATCTTTTTATGGATGTGGCTGGGCAAGTCAATGAAAAACGATGTGGATTGAC
CAGGCTATACTTTTTGCAAA

Downstream 100 bases:

>100_bases
TCTATTCATCGGGCTGATTAAAAACGTAAAATTCCAGCCCGATTCATCAAGTCAGAATATAAATCCAGTCCTTAACTTTT
ATTTAACTAAAAACCAGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MSYKRNNNLMTQENDLKRPTQELEHKPIHPVQNEAHYENEASSKAGETLKILTSTAEKIQRQPTIAHLIRATERFNDRLG
NQFGAAITYFSFLSMIPILMVSFAAAGFVLASHPMLLQDIFNKILLNISDPALAATLKNTINTAVQQRTTVGLVGLAVAL
YSGINWMGNLREAIRAQSRDVWERTPQDQEKFWLKYLRDFISLIGLLIALIVTLSITSIAGSAQQLIINTLHLNSIEWLK
PTWRLIGLAISIFANYLLFFWIFWRLPRHRPRRRALIRGTFIAAIGFEVIKIVMTYTLPSLMKSPSGAAFGSVLGLMAFF
YFFARLTLFCAAWIATAQYKDDPRMPGKNHA

Sequences:

>Translated_351_residues
MSYKRNNNLMTQENDLKRPTQELEHKPIHPVQNEAHYENEASSKAGETLKILTSTAEKIQRQPTIAHLIRATERFNDRLG
NQFGAAITYFSFLSMIPILMVSFAAAGFVLASHPMLLQDIFNKILLNISDPALAATLKNTINTAVQQRTTVGLVGLAVAL
YSGINWMGNLREAIRAQSRDVWERTPQDQEKFWLKYLRDFISLIGLLIALIVTLSITSIAGSAQQLIINTLHLNSIEWLK
PTWRLIGLAISIFANYLLFFWIFWRLPRHRPRRRALIRGTFIAAIGFEVIKIVMTYTLPSLMKSPSGAAFGSVLGLMAFF
YFFARLTLFCAAWIATAQYKDDPRMPGKNHA
>Mature_350_residues
SYKRNNNLMTQENDLKRPTQELEHKPIHPVQNEAHYENEASSKAGETLKILTSTAEKIQRQPTIAHLIRATERFNDRLGN
QFGAAITYFSFLSMIPILMVSFAAAGFVLASHPMLLQDIFNKILLNISDPALAATLKNTINTAVQQRTTVGLVGLAVALY
SGINWMGNLREAIRAQSRDVWERTPQDQEKFWLKYLRDFISLIGLLIALIVTLSITSIAGSAQQLIINTLHLNSIEWLKP
TWRLIGLAISIFANYLLFFWIFWRLPRHRPRRRALIRGTFIAAIGFEVIKIVMTYTLPSLMKSPSGAAFGSVLGLMAFFY
FFARLTLFCAAWIATAQYKDDPRMPGKNHA

Specific function: Unknown

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789939, Length=341, Percent_Identity=87.683284457478, Blast_Score=622, Evalue=1e-180,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005274
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: NA

Molecular weight: Translated: 39758; Mature: 39627

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYKRNNNLMTQENDLKRPTQELEHKPIHPVQNEAHYENEASSKAGETLKILTSTAEKIQ
CCCCCCCCCCCCCHHHCCCHHHHCCCCCCCCCCHHHCCHHHHHHHCCHHHHHHHHHHHHH
RQPTIAHLIRATERFNDRLGNQFGAAITYFSFLSMIPILMVSFAAAGFVLASHPMLLQDI
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
FNKILLNISDPALAATLKNTINTAVQQRTTVGLVGLAVALYSGINWMGNLREAIRAQSRD
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VWERTPQDQEKFWLKYLRDFISLIGLLIALIVTLSITSIAGSAQQLIINTLHLNSIEWLK
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHH
PTWRLIGLAISIFANYLLFFWIFWRLPRHRPRRRALIRGTFIAAIGFEVIKIVMTYTLPS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMKSPSGAAFGSVLGLMAFFYFFARLTLFCAAWIATAQYKDDPRMPGKNHA
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SYKRNNNLMTQENDLKRPTQELEHKPIHPVQNEAHYENEASSKAGETLKILTSTAEKIQ
CCCCCCCCCCCCHHHCCCHHHHCCCCCCCCCCHHHCCHHHHHHHCCHHHHHHHHHHHHH
RQPTIAHLIRATERFNDRLGNQFGAAITYFSFLSMIPILMVSFAAAGFVLASHPMLLQDI
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
FNKILLNISDPALAATLKNTINTAVQQRTTVGLVGLAVALYSGINWMGNLREAIRAQSRD
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VWERTPQDQEKFWLKYLRDFISLIGLLIALIVTLSITSIAGSAQQLIINTLHLNSIEWLK
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCHHHHH
PTWRLIGLAISIFANYLLFFWIFWRLPRHRPRRRALIRGTFIAAIGFEVIKIVMTYTLPS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMKSPSGAAFGSVLGLMAFFYFFARLTLFCAAWIATAQYKDDPRMPGKNHA
HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]