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The map label for this gene is yhcM [H]

Identifier: 218550509

GI number: 218550509

Start: 3289483

End: 3290610

Strand: Reverse

Name: yhcM [H]

Synonym: EFER_3203

Alternate gene names: 218550509

Gene position: 3290610-3289483 (Counterclockwise)

Preceding gene: 218550513

Following gene: 218550508

Centisome position: 71.71

GC content: 51.6

Gene sequence:

>1128_bases
ATGCAAAGCTTTACCCCAACATCGCGTTACCTCCAGGCTCTGAAAGAGGGTAGTCACCAACCGGACGACGTACAAAAAGA
GGCGGTGAATCGACTGGAAACGATTTATCAGGAGTTAATTAACGGTACGCCAACAGCGCCCAAAGCGAGCGGGTTAATGG
TGCGGATCGGAAAACTGCTGGGAAAACGCGAAGATACAACTAATGCACCCGTGCGCGGGTTGTATATGTGGGGCGGGGTA
GGACGCGGGAAAACCTGGCTGATGGACCTTTTCTATCAAAGCCTGCCGGGAGAGCGGAAACAGCGTCTGCACTTTCACCG
TTTTATGCTGCGGGTACATGAAGAGCTAACTGCTTTGCAGGGGCAGACCGATCCGCTGGAAATTATTGCCGATCGCTTTA
AAGCAGAAACTGACGTGCTCTGTTTTGACGAATTTTTTGTTTCTGATATTACCGATGCCATGCTACTTGGCGGCCTGATG
AAAGCCCTGTTCGCCCGCGGTATTACCCTGGTAGCGACGTCAAATATTCCGCCGGACGAACTTTATCGAAATGGCCTGCA
ACGTGCGCGTTTTTTGCCTGCAATCGATGCCATTAAACAGCATTGTGATGTAATGAACGTGGACGCTGGTGTTGATTATC
GACTGCGTACGCTCACTCAGGCGCACCTGTGGCTTTCGCCACTCAACGATGAAACCCAGGCGCAAATGGATAAACTATGG
TTGGCGCTGGCGGGGGCGAAACGAGAAAATTCACCGACGTTAGAAATCAACCATCGGCCGTTGGCGACAATGGGCGTCGA
GAACCAGACGCTGGCGGTCTCTTTTACTACGCTGTGCGTTGATGCCCGCAGTCAGCATGACTATATTGCGCTCTCACGTC
TCTTTCACACGGTCATGTTGTTTGATGTACCAGTCATGACGCGGTTGATGGAGAGCGAAGCGCGGCGCTTTATTGCGCTG
GTGGATGAGTTTTACGAGCGCCATGTCAAATTAGTGGTGGGTGCAGAAGTGCCGCTATATGAAATTTATCAGGGCGAGCG
GCTGAAATTTGAGTTCCAGCGTTGCCTGTCACGTCTGCAAGAGATGCAAAGCGAAGAGTATCTGAAGCGCGAGCATTTAG
CGGGTTAA

Upstream 100 bases:

>100_bases
AAGTGGAATCCCGACAGCATATCACGTAGTGTAGAACGGCCTTTTTTTCGCCAGGCATGAACTACGACAGATAAAGTATT
CGAGGAATAACAATAACATC

Downstream 100 bases:

>100_bases
AACCTGCCACAAATCACAAAAAGGGGTCGATCTTTGACCCCGACTTCTCTATAATCCTGCGACCCCACGTTACAAGAAAG
TTTTTTTCCCAAAACTTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MQSFTPTSRYLQALKEGSHQPDDVQKEAVNRLETIYQELINGTPTAPKASGLMVRIGKLLGKREDTTNAPVRGLYMWGGV
GRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTALQGQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLM
KALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTLTQAHLWLSPLNDETQAQMDKLW
LALAGAKRENSPTLEINHRPLATMGVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIAL
VDEFYERHVKLVVGAEVPLYEIYQGERLKFEFQRCLSRLQEMQSEEYLKREHLAG

Sequences:

>Translated_375_residues
MQSFTPTSRYLQALKEGSHQPDDVQKEAVNRLETIYQELINGTPTAPKASGLMVRIGKLLGKREDTTNAPVRGLYMWGGV
GRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTALQGQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLM
KALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTLTQAHLWLSPLNDETQAQMDKLW
LALAGAKRENSPTLEINHRPLATMGVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIAL
VDEFYERHVKLVVGAEVPLYEIYQGERLKFEFQRCLSRLQEMQSEEYLKREHLAG
>Mature_375_residues
MQSFTPTSRYLQALKEGSHQPDDVQKEAVNRLETIYQELINGTPTAPKASGLMVRIGKLLGKREDTTNAPVRGLYMWGGV
GRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTALQGQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLM
KALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTLTQAHLWLSPLNDETQAQMDKLW
LALAGAKRENSPTLEINHRPLATMGVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIAL
VDEFYERHVKLVVGAEVPLYEIYQGERLKFEFQRCLSRLQEMQSEEYLKREHLAG

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=411, Percent_Identity=33.8199513381995, Blast_Score=223, Evalue=2e-58,
Organism=Escherichia coli, GI1789627, Length=375, Percent_Identity=94.4, Blast_Score=739, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17505769, Length=417, Percent_Identity=33.0935251798561, Blast_Score=236, Evalue=1e-62,
Organism=Saccharomyces cerevisiae, GI6320783, Length=389, Percent_Identity=29.5629820051414, Blast_Score=161, Evalue=2e-40,
Organism=Drosophila melanogaster, GI20129913, Length=427, Percent_Identity=31.1475409836066, Blast_Score=190, Evalue=1e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42921; Mature: 42921

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQSFTPTSRYLQALKEGSHQPDDVQKEAVNRLETIYQELINGTPTAPKASGLMVRIGKLL
CCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
GKREDTTNAPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTALQ
CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
GQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLMKALFARGITLVATSNIPPDE
CCCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHH
LYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTLTQAHLWLSPLNDETQAQMDKLW
HHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LALAGAKRENSPTLEINHRPLATMGVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVML
HHHHCCCCCCCCEEEECCCCCEEECCCCCEEEEEHHHHHHHCCCCCHHHHHHHHHHHHHH
FDVPVMTRLMESEARRFIALVDEFYERHVKLVVGAEVPLYEIYQGERLKFEFQRCLSRLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHCCCCHHHHHHHHHHHHH
EMQSEEYLKREHLAG
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MQSFTPTSRYLQALKEGSHQPDDVQKEAVNRLETIYQELINGTPTAPKASGLMVRIGKLL
CCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
GKREDTTNAPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQRLHFHRFMLRVHEELTALQ
CCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
GQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLMKALFARGITLVATSNIPPDE
CCCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHH
LYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTLTQAHLWLSPLNDETQAQMDKLW
HHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LALAGAKRENSPTLEINHRPLATMGVENQTLAVSFTTLCVDARSQHDYIALSRLFHTVML
HHHHCCCCCCCCEEEECCCCCEEECCCCCEEEEEHHHHHHHCCCCCHHHHHHHHHHHHHH
FDVPVMTRLMESEARRFIALVDEFYERHVKLVVGAEVPLYEIYQGERLKFEFQRCLSRLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHCCCCHHHHHHHHHHHHH
EMQSEEYLKREHLAG
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]