Click here to switch to the map view.

The map label for this gene is yjiW [H]

Identifier: 218550390

GI number: 218550390

Start: 3159726

End: 3160124

Strand: Direct

Name: yjiW [H]

Synonym: EFER_3082

Alternate gene names: 218550390

Gene position: 3159726-3160124 (Clockwise)

Preceding gene: 218550389

Following gene: 218550391

Centisome position: 68.86

GC content: 52.63

Gene sequence:

>399_bases
GTGCGCCAACACACCCGCACCGCTCATCACAATCACTATTTCAGGAGAATAGCAGTTATGACTGACACGCATTCTATTGC
ACAACCGTTCGAAGCAGAAGTCTCCCCGGCAAATAACCGTCAATTAACCGTGAGTTATGCGAGTCGCTACCCGGATTACA
GCCGTATTCCCGCCATCACCCTGAAAGGTCAGTGGCTGGAAGTCGCCGGTTTTGCCACCGGCACGGCGGTAGATGTCAAA
GTGATGGAAGGCTGTATTGTCCTCACTGCCCAACCACCCGCCGCCGAAGAGAGCGAACTGATGCAGTCACTGCGCCAGGT
ATGCAAATTGTCGGCGCGTAAACAAAAGCAGGTGCAGGATTTTATTGGGGTAATTGCGGGTAAACAGAAAGTCGCGTAA

Upstream 100 bases:

>100_bases
TATTTAAATCACTCCAGAAATTGCCCATTTTATTCTATTTTTAGCTGGACTTTCCCTGTATTTACTGATGATATATCCAG
GTATTTAGCGCGGTGCGGAT

Downstream 100 bases:

>100_bases
CAGCGTTTACTCCCGGTTAACCACCGGGAGCCTTCCACTGACTCAATAGAAACTTTCCCCCTCAGTAAATATTTACCAGT
CTGATTTTGCAGTAAAAATC

Product: endoribonuclease SymE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MRQHTRTAHHNHYFRRIAVMTDTHSIAQPFEAEVSPANNRQLTVSYASRYPDYSRIPAITLKGQWLEVAGFATGTAVDVK
VMEGCIVLTAQPPAAEESELMQSLRQVCKLSARKQKQVQDFIGVIAGKQKVA

Sequences:

>Translated_132_residues
MRQHTRTAHHNHYFRRIAVMTDTHSIAQPFEAEVSPANNRQLTVSYASRYPDYSRIPAITLKGQWLEVAGFATGTAVDVK
VMEGCIVLTAQPPAAEESELMQSLRQVCKLSARKQKQVQDFIGVIAGKQKVA
>Mature_132_residues
MRQHTRTAHHNHYFRRIAVMTDTHSIAQPFEAEVSPANNRQLTVSYASRYPDYSRIPAITLKGQWLEVAGFATGTAVDVK
VMEGCIVLTAQPPAAEESELMQSLRQVCKLSARKQKQVQDFIGVIAGKQKVA

Specific function: Involved in the degradation and recycling of damaged RNA. It is itself a target for degradation by the ATP-dependent protease La [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the symE family [H]

Homologues:

Organism=Escherichia coli, GI145693217, Length=113, Percent_Identity=95.5752212389381, Blast_Score=224, Evalue=1e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020883
- InterPro:   IPR014944 [H]

Pfam domain/function: PF08845 DUF1813 [H]

EC number: NA

Molecular weight: Translated: 14724; Mature: 14724

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQHTRTAHHNHYFRRIAVMTDTHSIAQPFEAEVSPANNRQLTVSYASRYPDYSRIPAIT
CCCCCCCHHHHHHHHEEEEEECCHHHCCCCCCCCCCCCCCEEEEEEHHCCCCCCCCCEEE
LKGQWLEVAGFATGTAVDVKVMEGCIVLTAQPPAAEESELMQSLRQVCKLSARKQKQVQD
ECCCEEEEECCCCCCEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FIGVIAGKQKVA
HHHHHCCCCCCC
>Mature Secondary Structure
MRQHTRTAHHNHYFRRIAVMTDTHSIAQPFEAEVSPANNRQLTVSYASRYPDYSRIPAIT
CCCCCCCHHHHHHHHEEEEEECCHHHCCCCCCCCCCCCCCEEEEEEHHCCCCCCCCCEEE
LKGQWLEVAGFATGTAVDVKVMEGCIVLTAQPPAAEESELMQSLRQVCKLSARKQKQVQD
ECCCEEEEECCCCCCEEEEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FIGVIAGKQKVA
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA