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The map label for this gene is ybiA [H]

Identifier: 218550317

GI number: 218550317

Start: 3079868

End: 3080431

Strand: Direct

Name: ybiA [H]

Synonym: EFER_3009

Alternate gene names: 218550317

Gene position: 3079868-3080431 (Clockwise)

Preceding gene: 218550316

Following gene: 218550331

Centisome position: 67.12

GC content: 50.89

Gene sequence:

>564_bases
GTGCAGCAAGGATACTATTCTCTCCCCGCCCTTCTTTCCGCCCTTGATGCCGGGAAAAAAGTGAAATACCTGTGGTTCTG
GGGCCATCAACCTGCCTCGAATAACGAAATTACTGCCTCTTGCTTTAGTCAGTGGTGGCAGGGTTCGCCTTTTACCTATG
GTGGTATAACCTACGCTACCGCAGAGCACTGGATGATGGCAGGAAAAGCGCGGCTGTTTAATGACAGTAAAACGCTTGCC
AGAATTCTGGCGGCGGCGACCCCGGCAGAAGCCAAAAAGCTGGGGCGACAGGTGACAAACTTTGATGAACAACGCTGGCA
GGCCAGTTGCTTTGAGCTTGTCTGTGAAGGGAACTATCACAAATTTAGCCAACATTCGGCATTGAAAACATTCTTGCTAA
ATACGCAGCCTCGCATTCTGGTTGAAGCCAGCCCGGTGGATAAAATCTGGGGAATTGGCCTTGCAAAAGATCATCCCCAT
GCCGGAGTGCCGTCTCACTGGAAGGGGAAAAATCTGCTGGGGTTTGCGCTTATGGTAGTCAGAGACCGTTTGGCGGAAGA
ATAA

Upstream 100 bases:

>100_bases
CGAGCCGTTCTGAAGTGTTGCGTAGCTTCCTGGACGATTAATCGTAAAGATATGCATAAGCCCTCCCTCGTGAGGGCTTT
TTTATTAAGGAAATCTGGCA

Downstream 100 bases:

>100_bases
GCCCGTATCTGGGAGGAGCGGTGCTTTGCCCGCTCATAACTTCGTTACACTATACTTCACAAGCCCCGCATCACCAGCGA
CTGGTCCAGCTCGCGATACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MQQGYYSLPALLSALDAGKKVKYLWFWGHQPASNNEITASCFSQWWQGSPFTYGGITYATAEHWMMAGKARLFNDSKTLA
RILAAATPAEAKKLGRQVTNFDEQRWQASCFELVCEGNYHKFSQHSALKTFLLNTQPRILVEASPVDKIWGIGLAKDHPH
AGVPSHWKGKNLLGFALMVVRDRLAEE

Sequences:

>Translated_187_residues
MQQGYYSLPALLSALDAGKKVKYLWFWGHQPASNNEITASCFSQWWQGSPFTYGGITYATAEHWMMAGKARLFNDSKTLA
RILAAATPAEAKKLGRQVTNFDEQRWQASCFELVCEGNYHKFSQHSALKTFLLNTQPRILVEASPVDKIWGIGLAKDHPH
AGVPSHWKGKNLLGFALMVVRDRLAEE
>Mature_187_residues
MQQGYYSLPALLSALDAGKKVKYLWFWGHQPASNNEITASCFSQWWQGSPFTYGGITYATAEHWMMAGKARLFNDSKTLA
RILAAATPAEAKKLGRQVTNFDEQRWQASCFELVCEGNYHKFSQHSALKTFLLNTQPRILVEASPVDKIWGIGLAKDHPH
AGVPSHWKGKNLLGFALMVVRDRLAEE

Specific function: Required for swarming motility [H]

COG id: COG3236

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ybiA family [H]

Homologues:

Organism=Escherichia coli, GI1787017, Length=148, Percent_Identity=33.1081081081081, Blast_Score=73, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17564644, Length=132, Percent_Identity=34.8484848484849, Blast_Score=85, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17557728, Length=131, Percent_Identity=35.1145038167939, Blast_Score=79, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI212646224, Length=131, Percent_Identity=32.0610687022901, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012816 [H]

Pfam domain/function: PF08719 DUF1768 [H]

EC number: NA

Molecular weight: Translated: 21014; Mature: 21014

Theoretical pI: Translated: 9.39; Mature: 9.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQGYYSLPALLSALDAGKKVKYLWFWGHQPASNNEITASCFSQWWQGSPFTYGGITYAT
CCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEHHHHHHHHCCCCCEECCEEHHH
AEHWMMAGKARLFNDSKTLARILAAATPAEAKKLGRQVTNFDEQRWQASCFELVCEGNYH
HHHHHHHCHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCC
KFSQHSALKTFLLNTQPRILVEASPVDKIWGIGLAKDHPHAGVPSHWKGKNLLGFALMVV
CHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
RDRLAEE
HHHHCCC
>Mature Secondary Structure
MQQGYYSLPALLSALDAGKKVKYLWFWGHQPASNNEITASCFSQWWQGSPFTYGGITYAT
CCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEHHHHHHHHCCCCCEECCEEHHH
AEHWMMAGKARLFNDSKTLARILAAATPAEAKKLGRQVTNFDEQRWQASCFELVCEGNYH
HHHHHHHCHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCC
KFSQHSALKTFLLNTQPRILVEASPVDKIWGIGLAKDHPHAGVPSHWKGKNLLGFALMVV
CHHHHHHHHHHHHCCCCCEEEECCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
RDRLAEE
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]