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The map label for this gene is yqhC [H]

Identifier: 218550258

GI number: 218550258

Start: 3015841

End: 3016761

Strand: Reverse

Name: yqhC [H]

Synonym: EFER_2950

Alternate gene names: 218550258

Gene position: 3016761-3015841 (Counterclockwise)

Preceding gene: 218550263

Following gene: 218550255

Centisome position: 65.74

GC content: 47.88

Gene sequence:

>921_bases
ATGCCGAGAAAATCATGTGCTATGAACCGGGAAGAGATCTGCTTACAGCTTACAGAAAAAATTAATTTACTGAAAAATAA
CGTTAATATTCCGAAAGAGAGTGTGCCTGGCGTGCGTCTGATTTATGGCACTACGCCCGGTATGCGCACACCTGTGATGT
ATGATCCTGGTATCATTTTTCTCTTTTCCGGGCATAAAGTCGGATATATCAATGAGCGCGTGTTTCGTTACGACGCCAAT
GAATACCTGTTGTTGACCGTACCGCTTCCCTTCGAATGTGAAACTTTTGCCACGCCTGAAGTGCCGCTGGCAGGCATTCG
CCTGGATGTCGATGTTCTGCAATTACAGGAACTGCTAATGGATATCGGTGAAGACGAGCAGTTTCAGCCTGCGATGGCTG
CCAGTGGTATTAACTCTGCAATCTTGTCTGATGAAATCTTATGTGCTGCAGAGCGCTTATTAGATGTAATGGAACGACCG
CTGGATGCCCGAATACTTGGCAAGCAAATTGTTCGCGAGATCCTCTATCACGTGTTGACCGGACCTCGGGGAGGAGCACT
GCTGGCACTGGTGAGTCGCCAGACACATTTCAGTTTGATTAGCCGTGTCCTTAAGCGTATCGAAAATAAATACACTGAAA
ACCTGAGTGTGGAGCAGTTGGCTGCGGAAGCAAACATGAGCGTCTCGGCCTTTCATCATAATTTTAAGTCGGTCACCAGT
ACTTCGCCGCTGCAATATCTGAAAAGTTATCGACTGCATAAAGCCCGGATGATGATTATTCACGACGGGATGAAAGCCAG
TGCGGCGGCGATGCGTGTTGGCTATGAAAGTGCTTCGCAGTTTAGCCGCGAGTTTAAACGCTATTTTGGTGTGACGCCGG
GAGAAGATGCGGCAAGAATGCGGACGATACAAGGGAGTTAG

Upstream 100 bases:

>100_bases
GAGGCACTCCTCTCAATGCTCATTTCTGCCAATGTCTTGCCCATTTCTCCAGAGTGCTGGAGAAATGCAATAAATTTGCG
CACAATCAAAACGTCATAAA

Downstream 100 bases:

>100_bases
CCTGTACCCGCACAAATGTCGGGTACAGGCTACATACTCAGGAGTTGCAGTATTTCTTTTTGATAACCACAAACAGCGTG
CCTAACAAACCCGCAGTCAG

Product: DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MPRKSCAMNREEICLQLTEKINLLKNNVNIPKESVPGVRLIYGTTPGMRTPVMYDPGIIFLFSGHKVGYINERVFRYDAN
EYLLLTVPLPFECETFATPEVPLAGIRLDVDVLQLQELLMDIGEDEQFQPAMAASGINSAILSDEILCAAERLLDVMERP
LDARILGKQIVREILYHVLTGPRGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAFHHNFKSVTS
TSPLQYLKSYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRTIQGS

Sequences:

>Translated_306_residues
MPRKSCAMNREEICLQLTEKINLLKNNVNIPKESVPGVRLIYGTTPGMRTPVMYDPGIIFLFSGHKVGYINERVFRYDAN
EYLLLTVPLPFECETFATPEVPLAGIRLDVDVLQLQELLMDIGEDEQFQPAMAASGINSAILSDEILCAAERLLDVMERP
LDARILGKQIVREILYHVLTGPRGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAFHHNFKSVTS
TSPLQYLKSYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRTIQGS
>Mature_305_residues
PRKSCAMNREEICLQLTEKINLLKNNVNIPKESVPGVRLIYGTTPGMRTPVMYDPGIIFLFSGHKVGYINERVFRYDANE
YLLLTVPLPFECETFATPEVPLAGIRLDVDVLQLQELLMDIGEDEQFQPAMAASGINSAILSDEILCAAERLLDVMERPL
DARILGKQIVREILYHVLTGPRGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAFHHNFKSVTST
SPLQYLKSYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRTIQGS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=306, Percent_Identity=85.6209150326797, Blast_Score=541, Evalue=1e-155,
Organism=Escherichia coli, GI1786496, Length=88, Percent_Identity=39.7727272727273, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34372; Mature: 34241

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRKSCAMNREEICLQLTEKINLLKNNVNIPKESVPGVRLIYGTTPGMRTPVMYDPGIIF
CCCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCEEE
LFSGHKVGYINERVFRYDANEYLLLTVPLPFECETFATPEVPLAGIRLDVDVLQLQELLM
EECCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCCCCCCCEECEEECHHHHHHHHHHH
DIGEDEQFQPAMAASGINSAILSDEILCAAERLLDVMERPLDARILGKQIVREILYHVLT
HCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
GPRGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAFHHNFKSVTS
CCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHCC
TSPLQYLKSYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARM
CCHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHH
RTIQGS
EECCCC
>Mature Secondary Structure 
PRKSCAMNREEICLQLTEKINLLKNNVNIPKESVPGVRLIYGTTPGMRTPVMYDPGIIF
CCCHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCEEE
LFSGHKVGYINERVFRYDANEYLLLTVPLPFECETFATPEVPLAGIRLDVDVLQLQELLM
EECCCEEEEECCEEEEECCCCEEEEEECCCCCCCCCCCCCCCEECEEECHHHHHHHHHHH
DIGEDEQFQPAMAASGINSAILSDEILCAAERLLDVMERPLDARILGKQIVREILYHVLT
HCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
GPRGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAFHHNFKSVTS
CCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHCC
TSPLQYLKSYRLHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARM
CCHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCHHHH
RTIQGS
EECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]