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The map label for this gene is yghD [H]

Identifier: 218550232

GI number: 218550232

Start: 2991897

End: 2992433

Strand: Direct

Name: yghD [H]

Synonym: EFER_2924

Alternate gene names: 218550232

Gene position: 2991897-2992433 (Clockwise)

Preceding gene: 218550231

Following gene: 218550233

Centisome position: 65.2

GC content: 53.63

Gene sequence:

>537_bases
ATGTTACGCGATAAATTTATTCACTATTTTCAGCAATGGCGTGAACGCCAGTTAAGCCGTGGCGAACACTGGCTGGCACA
ACACCTGGCGGGGCGTTCGCCGCGTGAAAAGGGCATGTTACTGGCAGCGGTGGTGTTCCTGTTTAGCGCCGGATATTACG
TCCTCATCTGGCAGCCTTTGAGCGAACGGATTGAGCAACAGGAGACAATATTGCAGCAACTGGAGGCGATGAACACCCGA
CTGAAGCGCGCCGCGCCGTATATTATTGCAGCGCGAAACTCCGCCACAACAACGCCTGTGCAGGTATCGCGGGTCATCAG
TGACAGTGCTTCCGCGCACTCGGTGGTCATCAAACGGATAGCCGAGCGAGGGGAGAATATTCAAGTCTGGATAGAACCGG
TGGTGTTTAATGACCTGCTGAACTGGTTAAACGCGCTGGATGAAAAGTATGCGCTGCAGGTGACACAAATTGATGTTAGC
ACAGGTGAAAAGGCAGGAATGGTGGAGGTGCAGCGACTGGAATTTGGGCGGGGCTGA

Upstream 100 bases:

>100_bases
CTGCGTAGCGCGCTGGCGGCAGATTATGTTGTGCAACAGGACGCGTTACAGAAAGAGGGTGATGCGGTTTCCGGCGGCGT
AACGTTGCGGAGGAAATAAC

Downstream 100 bases:

>100_bases
TCGTCACAAGTGGCTTATCACCGTGACCACACCCCTCCTGAATGATAAATGTGGATACTGGCGGGCTTCCGCCAGCCTTT
CATATTGTGAACAATTGCAA

Product: general secretion pathway protein YghD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAVVFLFSAGYYVLIWQPLSERIEQQETILQQLEAMNTR
LKRAAPYIIAARNSATTTPVQVSRVISDSASAHSVVIKRIAERGENIQVWIEPVVFNDLLNWLNALDEKYALQVTQIDVS
TGEKAGMVEVQRLEFGRG

Sequences:

>Translated_178_residues
MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAVVFLFSAGYYVLIWQPLSERIEQQETILQQLEAMNTR
LKRAAPYIIAARNSATTTPVQVSRVISDSASAHSVVIKRIAERGENIQVWIEPVVFNDLLNWLNALDEKYALQVTQIDVS
TGEKAGMVEVQRLEFGRG
>Mature_178_residues
MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAVVFLFSAGYYVLIWQPLSERIEQQETILQQLEAMNTR
LKRAAPYIIAARNSATTTPVQVSRVISDSASAHSVVIKRIAERGENIQVWIEPVVFNDLLNWLNALDEKYALQVTQIDVS
TGEKAGMVEVQRLEFGRG

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG3149

COG function: function code U; Type II secretory pathway, component PulM

Gene ontology:

Cell location: Cell inner membrane (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP M family [H]

Homologues:

Organism=Escherichia coli, GI1789339, Length=178, Percent_Identity=92.1348314606742, Blast_Score=335, Evalue=1e-93,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007690
- InterPro:   IPR023229 [H]

Pfam domain/function: PF04612 GspM [H]

EC number: NA

Molecular weight: Translated: 20450; Mature: 20450

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAVVFLFSAGYYVLIWQPL
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECHH
SERIEQQETILQQLEAMNTRLKRAAPYIIAARNSATTTPVQVSRVISDSASAHSVVIKRI
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHH
AERGENIQVWIEPVVFNDLLNWLNALDEKYALQVTQIDVSTGEKAGMVEVQRLEFGRG
HHCCCCEEEEEHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAVVFLFSAGYYVLIWQPL
CCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEEECHH
SERIEQQETILQQLEAMNTRLKRAAPYIIAARNSATTTPVQVSRVISDSASAHSVVIKRI
HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHH
AERGENIQVWIEPVVFNDLLNWLNALDEKYALQVTQIDVSTGEKAGMVEVQRLEFGRG
HHCCCCEEEEEHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]