Click here to switch to the map view.

The map label for this gene is yghF [H]

Identifier: 218550222

GI number: 218550222

Start: 2981978

End: 2982931

Strand: Direct

Name: yghF [H]

Synonym: EFER_2914

Alternate gene names: 218550222

Gene position: 2981978-2982931 (Clockwise)

Preceding gene: 218550221

Following gene: 218550223

Centisome position: 64.99

GC content: 50.21

Gene sequence:

>954_bases
TTGGCGCGGGTTGTTTTTCGTGACGCACGAATTTATCTCATTCAATGGCTGACTAAAATTCGTCACACTCTTAACCAGAG
ACAATCTCTTAATACAAACAAAGAGCATCTTCGCAAAATTGTACGCGCGATGTTCTGGCTGATGCTGCTTATTATTTCTG
CAAAAATGGCGTATTCACTCTGGCGCTATTTCTCCTTTTCTGCGGAATATACGGCGGTTTCTCAATCGGTGAATAAACCG
CCCCGCGCGGATGCAAAACCGTTCGATAAAAATGACGCGCAATTAATCAGCCAGCAAAACTGGTTTGGTAAATATCAGCG
CGTCGCCACACCGGTAAAGCAACCTGAACCTGTAGCAGAAACGCGTCTTAATGTGGTGCTGCGCGGGATCGCCTTTGGTG
CCAGACCCGGCGCGGTTATTGAAGAAGGTGGCAAACAGCAGGTCTATTTGCAGGGTGAACGGCTTGGCTCTCACAACGCA
GTGATTGAGGAAATCAACCGCGACCATGTGATGCTGCGCTATCAGGGAAAAATAGAGCGGCTCAGTCTGGCAGAAGAGGA
GCGTTCCACCGTAGCCGTGACCAACAAAAAAGCCGTCAGTGACGAAGCAAAGCAAGCTGTTGCTGAGCCTGCTGCCAGTG
CGCCCGTTGAGATCCCGGCTGCCGTGCGTCAGGCACTGGCGAAAGATCCGCAGAAAATTTTTAACTATATCCAGCTTACG
CCTGTGCGTAAGGAGGGGATTGTCGGTTATGCAGTGAAACCGGGGGCAGATCGTTCTCTGTTCGATGCCAGCGGTTTCAA
GGAAGGCGATATCGCCATTGCACTAAATCAGCAGGATTTCACTGATCCACGAGCAATGATTGCTCTGATGCGGCAATTAC
CTTCAATGGATTCCATTCAACTTACGGTTTTACGCAAGGGTGCGCGCTACGACATTTCCATCGCGCTGCGCTAA

Upstream 100 bases:

>100_bases
CAGCATAACGATTAATGATACACGTACAGGTAACCAGTATCAGCGGAAACTGGATCGCACTACTTGTGGAATAGTCAAAG
CATAACGTCGGGTATATAAA

Downstream 100 bases:

>100_bases
CCGCATTTAATCCAGGAGAATCATTCATCGTGTTTTGGCGTGATATTACGTTGTCGGTCTGGCGTAAGAAGACAACTGGC
CTCAAAACAAAAAAGCGTTT

Product: type II secretion protein GspC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MARVVFRDARIYLIQWLTKIRHTLNQRQSLNTNKEHLRKIVRAMFWLMLLIISAKMAYSLWRYFSFSAEYTAVSQSVNKP
PRADAKPFDKNDAQLISQQNWFGKYQRVATPVKQPEPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGERLGSHNA
VIEEINRDHVMLRYQGKIERLSLAEEERSTVAVTNKKAVSDEAKQAVAEPAASAPVEIPAAVRQALAKDPQKIFNYIQLT
PVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARYDISIALR

Sequences:

>Translated_317_residues
MARVVFRDARIYLIQWLTKIRHTLNQRQSLNTNKEHLRKIVRAMFWLMLLIISAKMAYSLWRYFSFSAEYTAVSQSVNKP
PRADAKPFDKNDAQLISQQNWFGKYQRVATPVKQPEPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGERLGSHNA
VIEEINRDHVMLRYQGKIERLSLAEEERSTVAVTNKKAVSDEAKQAVAEPAASAPVEIPAAVRQALAKDPQKIFNYIQLT
PVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARYDISIALR
>Mature_316_residues
ARVVFRDARIYLIQWLTKIRHTLNQRQSLNTNKEHLRKIVRAMFWLMLLIISAKMAYSLWRYFSFSAEYTAVSQSVNKPP
RADAKPFDKNDAQLISQQNWFGKYQRVATPVKQPEPVAETRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGERLGSHNAV
IEEINRDHVMLRYQGKIERLSLAEEERSTVAVTNKKAVSDEAKQAVAEPAASAPVEIPAAVRQALAKDPQKIFNYIQLTP
VRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARYDISIALR

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG3031

COG function: function code U; Type II secretory pathway, component PulC

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP C family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR001639 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35736; Mature: 35605

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: PS01141 T2SP_C

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVVFRDARIYLIQWLTKIRHTLNQRQSLNTNKEHLRKIVRAMFWLMLLIISAKMAYSL
CCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRYFSFSAEYTAVSQSVNKPPRADAKPFDKNDAQLISQQNWFGKYQRVATPVKQPEPVAE
HHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
TRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGERLGSHNAVIEEINRDHVMLRYQGKIER
HHHHHHHHHHHCCCCCCHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCEEEEEECCCHHH
LSLAEEERSTVAVTNKKAVSDEAKQAVAEPAASAPVEIPAAVRQALAKDPQKIFNYIQLT
HHHHHHHCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCC
PVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQ
EECCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEE
LTVLRKGARYDISIALR
EEEEECCCCEEEEEEEC
>Mature Secondary Structure 
ARVVFRDARIYLIQWLTKIRHTLNQRQSLNTNKEHLRKIVRAMFWLMLLIISAKMAYSL
CCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRYFSFSAEYTAVSQSVNKPPRADAKPFDKNDAQLISQQNWFGKYQRVATPVKQPEPVAE
HHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
TRLNVVLRGIAFGARPGAVIEEGGKQQVYLQGERLGSHNAVIEEINRDHVMLRYQGKIER
HHHHHHHHHHHCCCCCCHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCEEEEEECCCHHH
LSLAEEERSTVAVTNKKAVSDEAKQAVAEPAASAPVEIPAAVRQALAKDPQKIFNYIQLT
HHHHHHHCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHCC
PVRKEGIVGYAVKPGADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQ
EECCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEE
LTVLRKGARYDISIALR
EEEEECCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]