Click here to switch to the map view.

The map label for this gene is ppdB [H]

Identifier: 218550073

GI number: 218550073

Start: 2823293

End: 2824096

Strand: Reverse

Name: ppdB [H]

Synonym: EFER_2758

Alternate gene names: 218550073

Gene position: 2824096-2823293 (Counterclockwise)

Preceding gene: 218550074

Following gene: 218550072

Centisome position: 61.54

GC content: 51.24

Gene sequence:

>804_bases
ATGGTGTCTTGTCAGCTCAGCCGTAGGGCAAACAACCTGCATGCCCTCCTCACCACTGATATTTACGCCCGGTTGGGAAG
AGATAAACCTGGCCGAAGCCACTCCGGCACTGGCGTTTTATGGCCTGCGCAATACTGCCTGGCCTGGTCATATTCGTCTG
CAAAACACCGCAGGCGAATGGCAAATAGTGATCTCTCCCTGGGGGCGAATCCGCTTGTGCAAGCCAACCCAGGTAGAGAG
CTGCCGTTAAACGAGCGTGGTTTTTCTTTACTTGAAGTGCTTATCGCGATGGCTGTCAGTAGCGTGTTATTGCTTGGTAC
AGCTCGTTTTTTACCTGCTATTCAACGTGATGTCTTAAGCAATACGTTAAAACTGGCGCTGGAAGACGAACTCTGGCAAC
GCACTTATACGGTCGCAAAACATCTCCAGCGGGCGGGATATTGCCGGGGGAAATGTAGCGGTGAAGGATTAAAAATCGTC
AATAACGGAGAGTGCATAATTGTTCAGTGGGATGCCAACAATAATGGCCGCTTTGAAACAGCCCCCTCCAAAGACTCAGA
ACAAGTGGGATTCCGTCTCAAAGATAACGCCCTGGAAACACTGCGCGGCGCGACATCCTGCACCGGTAAAGGCTGGGACA
GGATGACCGAACCTGATGCCATTGTCGTCGAAACGTTCACGGTTGAGAGGCATAACCAAAACGGTTTCGCTCCACTTCTC
ACCGTGCGATTACGTGGTGCCAGTAAAAACAAACCACAGCACAGTACAGAGGCGCAATACAGCGTGACGGGGTTTAATTT
GTGA

Upstream 100 bases:

>100_bases
AAACCGCCTGCCAGCTGCGCGATTACTTACTGTATTTGCGTGAGGATGCCAACTGGCATAACCGCGATCATGTCATCAGT
GTTATCAGGGAGGGAAAGTC

Downstream 100 bases:

>100_bases
ATCGTGAACGGGGAGTCTCGTCGCTGGGCTTAGTCTTGTTATTGCTGATCCTCGGTAGCTTACTGCTTCAGGGGCTAAAT
CAGCAGGAGCGCAGCTACTC

Product: prepilin peptidase-dependent protein B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MVSCQLSRRANNLHALLTTDIYARLGRDKPGRSHSGTGVLWPAQYCLAWSYSSAKHRRRMANSDLSLGANPLVQANPGRE
LPLNERGFSLLEVLIAMAVSSVLLLGTARFLPAIQRDVLSNTLKLALEDELWQRTYTVAKHLQRAGYCRGKCSGEGLKIV
NNGECIIVQWDANNNGRFETAPSKDSEQVGFRLKDNALETLRGATSCTGKGWDRMTEPDAIVVETFTVERHNQNGFAPLL
TVRLRGASKNKPQHSTEAQYSVTGFNL

Sequences:

>Translated_267_residues
MVSCQLSRRANNLHALLTTDIYARLGRDKPGRSHSGTGVLWPAQYCLAWSYSSAKHRRRMANSDLSLGANPLVQANPGRE
LPLNERGFSLLEVLIAMAVSSVLLLGTARFLPAIQRDVLSNTLKLALEDELWQRTYTVAKHLQRAGYCRGKCSGEGLKIV
NNGECIIVQWDANNNGRFETAPSKDSEQVGFRLKDNALETLRGATSCTGKGWDRMTEPDAIVVETFTVERHNQNGFAPLL
TVRLRGASKNKPQHSTEAQYSVTGFNL
>Mature_267_residues
MVSCQLSRRANNLHALLTTDIYARLGRDKPGRSHSGTGVLWPAQYCLAWSYSSAKHRRRMANSDLSLGANPLVQANPGRE
LPLNERGFSLLEVLIAMAVSSVLLLGTARFLPAIQRDVLSNTLKLALEDELWQRTYTVAKHLQRAGYCRGKCSGEGLKIV
NNGECIIVQWDANNNGRFETAPSKDSEQVGFRLKDNALETLRGATSCTGKGWDRMTEPDAIVVETFTVERHNQNGFAPLL
TVRLRGASKNKPQHSTEAQYSVTGFNL

Specific function: Not yet known [H]

COG id: COG4795

COG function: function code U; Type II secretory pathway, component PulJ

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789189, Length=187, Percent_Identity=66.8449197860963, Blast_Score=278, Evalue=3e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012902
- InterPro:   IPR016419
- InterPro:   IPR001120 [H]

Pfam domain/function: PF07963 N_methyl [H]

EC number: NA

Molecular weight: Translated: 29527; Mature: 29527

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSCQLSRRANNLHALLTTDIYARLGRDKPGRSHSGTGVLWPAQYCLAWSYSSAKHRRRM
CCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHEECCHHHHHHHHH
ANSDLSLGANPLVQANPGRELPLNERGFSLLEVLIAMAVSSVLLLGTARFLPAIQRDVLS
CCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NTLKLALEDELWQRTYTVAKHLQRAGYCRGKCSGEGLKIVNNGECIIVQWDANNNGRFET
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCEEC
APSKDSEQVGFRLKDNALETLRGATSCTGKGWDRMTEPDAIVVETFTVERHNQNGFAPLL
CCCCCCHHCCEEECCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEE
TVRLRGASKNKPQHSTEAQYSVTGFNL
EEEEECCCCCCCCCCCCCEEEEECCCC
>Mature Secondary Structure
MVSCQLSRRANNLHALLTTDIYARLGRDKPGRSHSGTGVLWPAQYCLAWSYSSAKHRRRM
CCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHEECCHHHHHHHHH
ANSDLSLGANPLVQANPGRELPLNERGFSLLEVLIAMAVSSVLLLGTARFLPAIQRDVLS
CCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NTLKLALEDELWQRTYTVAKHLQRAGYCRGKCSGEGLKIVNNGECIIVQWDANNNGRFET
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCEEEEEEECCCCCCEEC
APSKDSEQVGFRLKDNALETLRGATSCTGKGWDRMTEPDAIVVETFTVERHNQNGFAPLL
CCCCCCHHCCEEECCHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCEEE
TVRLRGASKNKPQHSTEAQYSVTGFNL
EEEEECCCCCCCCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3520484; 9278503; 7934814 [H]