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The map label for this gene is crl [H]

Identifier: 218550053

GI number: 218550053

Start: 2798964

End: 2799365

Strand: Reverse

Name: crl [H]

Synonym: EFER_2738

Alternate gene names: 218550053

Gene position: 2799365-2798964 (Counterclockwise)

Preceding gene: 218550054

Following gene: 218550051

Centisome position: 61.01

GC content: 49.75

Gene sequence:

>402_bases
ATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCCTATATTCGTGAAGGTAA
GTGCGAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCAGCGCCGGAAGTGCGTGAGTTCT
GGGGTTGGTGGATGGAGCTTGAAGCGCAGGAATCCCGTTTTACTTACAGCTACCAGTTTGGTCTGTTCGATAAAGCAGGC
GACTGGAAGAGTGTTCCGGTAAAAGATGCCGAAGTGGTTGAGCGACTGGAACATACCCTGCGTGAGTTTCACGAGAAGCT
GCGTGAACTGTTGTCGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGATGAACCGGTGAAGTTAACCGCGT
GA

Upstream 100 bases:

>100_bases
TCTTCAGGAAATCACGAGCTGGATCGAAAAACGATTGTGTTAAAAATTTGCTAAATTTTACCAGTTTGGTAAAACAGGTG
CATCACAACAGGAGATCGCA

Downstream 100 bases:

>100_bases
GTGAAAAGTGCCGGATGCGCCGCATCCGGCAATCTCCATTAAAACTGATAGGTCATCCCAACCGCGACAATATCATCATT
ATTAATATTTAATTTGTTAT

Product: DNA-binding transcriptional regulator Crl

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MTLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAG
DWKSVPVKDAEVVERLEHTLREFHEKLRELLSTLNLKLEPADDFRDEPVKLTA

Sequences:

>Translated_133_residues
MTLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAG
DWKSVPVKDAEVVERLEHTLREFHEKLRELLSTLNLKLEPADDFRDEPVKLTA
>Mature_132_residues
TLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGD
WKSVPVKDAEVVERLEHTLREFHEKLRELLSTLNLKLEPADDFRDEPVKLTA

Specific function: Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the crl family [H]

Homologues:

Organism=Escherichia coli, GI1786435, Length=133, Percent_Identity=97.7443609022556, Blast_Score=271, Evalue=1e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009986 [H]

Pfam domain/function: PF07417 Crl [H]

EC number: NA

Molecular weight: Translated: 15612; Mature: 15481

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL
CCCCCCCCHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHE
EAQESRFTYSYQFGLFDKAGDWKSVPVKDAEVVERLEHTLREFHEKLRELLSTLNLKLEP
ECCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ADDFRDEPVKLTA
CCCCCCCCEEECC
>Mature Secondary Structure 
TLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEVREFWGWWMEL
CCCCCCCHHHHHHHHHHHCCHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHE
EAQESRFTYSYQFGLFDKAGDWKSVPVKDAEVVERLEHTLREFHEKLRELLSTLNLKLEP
ECCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ADDFRDEPVKLTA
CCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA