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The map label for this gene is ybcQ [H]

Identifier: 218550021

GI number: 218550021

Start: 2779509

End: 2779901

Strand: Reverse

Name: ybcQ [H]

Synonym: EFER_2706

Alternate gene names: 218550021

Gene position: 2779901-2779509 (Counterclockwise)

Preceding gene: 218550022

Following gene: 218550019

Centisome position: 60.58

GC content: 47.84

Gene sequence:

>393_bases
TTGTGGAGTAAGTTGATGCGTGATATTCAGATGGTTCTTGAGCGTTGGGGAGCGTGGGCGGCTAATAATCATGAAGATGT
GACCTGGTCGTCCATTGCCGCCGGTTTTAAGGGATTAATTCCTTCAAAAGTAAAATCTCGCCCACAATGTTGTGACGATG
ACGCGATGATCATTTGCGGGTGCATGGCCCGTCTGAAAAAGAACAACAGCGATTTGCATGATTTATTGGTGGACTATTAT
GTCGGCGGCATGACTTTTATGGCGCTTGCACGTAAGCATGGGCGATCTGATTGTTGGGTTGGCAGGATGCTCCAGAAAGC
TGAGGGCGTAGTGGAGGGTATGCTGATGGTGTTGGATCTCCGATTGGAGATGGATGCTGATTGTTCGAAATAA

Upstream 100 bases:

>100_bases
GCCAAAACCCTGACAGGAGCAGGAGTATGAAGTCAGAGATAACAATCAACTAATACTGTTTTGTTGATTTTTGCTTGTAA
TTGGCGTTCTGGTCTGATTT

Downstream 100 bases:

>100_bases
TTAAAGGAAAAGTTGCTGTCTGATTGTCATTAGTCTAACATTTTAAATGTTGGAATCGCAACGTAGTTATTATCATATAA
CAGCTTGTTTCCTGATTTAG

Product: antitermination protein Q-like protein; DLP12 prophage

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MWSKLMRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLIPSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYY
VGGMTFMALARKHGRSDCWVGRMLQKAEGVVEGMLMVLDLRLEMDADCSK

Sequences:

>Translated_130_residues
MWSKLMRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLIPSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYY
VGGMTFMALARKHGRSDCWVGRMLQKAEGVVEGMLMVLDLRLEMDADCSK
>Mature_130_residues
MWSKLMRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLIPSKVKSRPQCCDDDAMIICGCMARLKKNNSDLHDLLVDYY
VGGMTFMALARKHGRSDCWVGRMLQKAEGVVEGMLMVLDLRLEMDADCSK

Specific function: Positively regulate expression of some phage genes. Bacterial host RNA polymerase modified by antitermination proteins transcribes through termination sites that otherwise prevent expression of the regulated genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage antitermination Q type 1 family [H]

Homologues:

Organism=Escherichia coli, GI1786763, Length=120, Percent_Identity=87.5, Blast_Score=218, Evalue=8e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010534 [H]

Pfam domain/function: PF06530 Phage_antitermQ [H]

EC number: NA

Molecular weight: Translated: 14688; Mature: 14688

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.6 %Cys     (Translated Protein)
8.5 %Met     (Translated Protein)
13.1 %Cys+Met (Translated Protein)
4.6 %Cys     (Mature Protein)
8.5 %Met     (Mature Protein)
13.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWSKLMRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLIPSKVKSRPQCCDDDAMIICG
CHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHH
CMARLKKNNSDLHDLLVDYYVGGMTFMALARKHGRSDCWVGRMLQKAEGVVEGMLMVLDL
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RLEMDADCSK
HHCCCCCCCC
>Mature Secondary Structure
MWSKLMRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLIPSKVKSRPQCCDDDAMIICG
CHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCHHHHHH
CMARLKKNNSDLHDLLVDYYVGGMTFMALARKHGRSDCWVGRMLQKAEGVVEGMLMVLDL
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RLEMDADCSK
HHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8648624; 9278503 [H]