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The map label for this gene is ybgJ [H]

Identifier: 218549729

GI number: 218549729

Start: 2466119

End: 2466775

Strand: Reverse

Name: ybgJ [H]

Synonym: EFER_2406

Alternate gene names: 218549729

Gene position: 2466775-2466119 (Counterclockwise)

Preceding gene: 218549730

Following gene: 218549728

Centisome position: 53.76

GC content: 54.34

Gene sequence:

>657_bases
GTGCAACGAGCGCGTTGTTATCTGTTAGGTGAAACGGCGGTAGTGCTGGAACTGGAGCCGCCAGTCACGCTGGCCAGCCA
GAAACGTATCTGGCGACTGGCGCAGCGTCTGGTGGATATGCCGAATGTCGTGGAATCGATACCGGGTATGAACAATATCA
CGGTAATTTTAAAGGAACCGCAATCGCTGGCTCTGGATGCGATTGAGCGTTTACAACGCTGGTGGGAAGAGAGCGACGCA
CTGGAGCCTGACTCGCGCTTTATCGAAATCCCGGTAGTTTATGGTGGAGCAGGTGGCCCCGATCTGTCTGTTGTCGCAAG
TCACTGTGGATTAAGTGAAAAGCAGGTGGTAGAGCTGCACTCGTCAGTGGAGTATGTGGTCTGGTTCCTCGGATTCCAGC
CAGGATTCCCTTATCTGGGTAACTTACCGGAACAACTGCATACCCCTCGTCGCGCAGAACCACGCCTGAGTGTTCCGGCA
GGTTCTGTGGGAATTGGTGGGCCACAGACGGGGATCTACCCAATTCCAACACCTGGCGGCTGGCAGTTAATTGGTCATAC
ATCGTTGAAATTGTTTGATCCCACACGGGATGAGCCCATCTTGTTGCGCCCAGGAGATAGCGTGCGCTTTGTACCGCAGA
AGGAGGGAGTATGCTGA

Upstream 100 bases:

>100_bases
ATTCGCGCTTTGAGTGAGTGGCTGAACGAAAATACTGATCTGGATGTGACCTTTATTGATATTCCAAATCCTGCATAACT
AACTATTAGAGGGAACGAAA

Downstream 100 bases:

>100_bases
AAATCATTCGCGCGGGAATGTACACCACTGTTCAGGATGGCGGTCGTCATGGTTTTCGTCAGTCTGGGATCAGTCACTGT
GGCGCACTGGATTTGCCTGC

Product: hydrolase subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MQRARCYLLGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVESIPGMNNITVILKEPQSLALDAIERLQRWWEESDA
LEPDSRFIEIPVVYGGAGGPDLSVVASHCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGNLPEQLHTPRRAEPRLSVPA
GSVGIGGPQTGIYPIPTPGGWQLIGHTSLKLFDPTRDEPILLRPGDSVRFVPQKEGVC

Sequences:

>Translated_218_residues
MQRARCYLLGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVESIPGMNNITVILKEPQSLALDAIERLQRWWEESDA
LEPDSRFIEIPVVYGGAGGPDLSVVASHCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGNLPEQLHTPRRAEPRLSVPA
GSVGIGGPQTGIYPIPTPGGWQLIGHTSLKLFDPTRDEPILLRPGDSVRFVPQKEGVC
>Mature_218_residues
MQRARCYLLGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVESIPGMNNITVILKEPQSLALDAIERLQRWWEESDA
LEPDSRFIEIPVVYGGAGGPDLSVVASHCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGNLPEQLHTPRRAEPRLSVPA
GSVGIGGPQTGIYPIPTPGGWQLIGHTSLKLFDPTRDEPILLRPGDSVRFVPQKEGVC

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786929, Length=218, Percent_Identity=92.6605504587156, Blast_Score=416, Evalue=1e-118,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02682 AHS1 [H]

EC number: NA

Molecular weight: Translated: 24065; Mature: 24065

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRARCYLLGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVESIPGMNNITVILKEP
CCCCEEEEEECEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECC
QSLALDAIERLQRWWEESDALEPDSRFIEIPVVYGGAGGPDLSVVASHCGLSEKQVVELH
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHH
SSVEYVVWFLGFQPGFPYLGNLPEQLHTPRRAEPRLSVPAGSVGIGGPQTGIYPIPTPGG
HHHEEEEEEEECCCCCCCCCCCHHHHCCCCCCCCCEECCCCCCCCCCCCCCEEECCCCCC
WQLIGHTSLKLFDPTRDEPILLRPGDSVRFVPQKEGVC
EEEEECCEEEEECCCCCCEEEEECCCCEEEECCCCCCC
>Mature Secondary Structure
MQRARCYLLGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVVESIPGMNNITVILKEP
CCCCEEEEEECEEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECC
QSLALDAIERLQRWWEESDALEPDSRFIEIPVVYGGAGGPDLSVVASHCGLSEKQVVELH
HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHCCCCHHHHHHHH
SSVEYVVWFLGFQPGFPYLGNLPEQLHTPRRAEPRLSVPAGSVGIGGPQTGIYPIPTPGG
HHHEEEEEEEECCCCCCCCCCCHHHHCCCCCCCCCEECCCCCCCCCCCCCCEEECCCCCC
WQLIGHTSLKLFDPTRDEPILLRPGDSVRFVPQKEGVC
EEEEECCEEEEECCCCCCEEEEECCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]