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The map label for this gene is ybiX [H]

Identifier: 218549629

GI number: 218549629

Start: 2363088

End: 2363765

Strand: Direct

Name: ybiX [H]

Synonym: EFER_2304

Alternate gene names: 218549629

Gene position: 2363088-2363765 (Clockwise)

Preceding gene: 218549628

Following gene: 218549630

Centisome position: 51.5

GC content: 54.13

Gene sequence:

>678_bases
ATGATGTACCACATTCCCGGCGTGCTATCGCCAAAGGACGTCGCCCGGTTTCGCGAACAACTGGAACAAGCCGAATGGGT
GGATGGACGCGTCACCACCGGCGCACAAGGCGCGCAAGTTAAGAACAATCAACAGGTCGACACCCGCAGTGCGTTATACG
CCGCCCTGCAAAATGAGGTGCTGAACGCGGTTAACCAACATGCATTGTTCTTTGCCGCTGCCTTGCCGCGTACCCTTTCC
ACGCCGCTGTTTAATCGTTATCAGAACAATGAAACCTATGGTTTTCATGTGGATGGCGCGGTACGCAGTCACCCACAAAA
CGGCTGGATGCGCACTGACCTTTCTGCCACGCTGTTTTTAAGCGATCCGCAAAGTTACGACGGCGGCGAACTGGTCGTTA
ATGACACCTTCGGACAACATCGGGTAAAACTCCCGGCAGGCGATCTGGTGTTGTACCCTTCCAGCAGCCTGCACTGCGTG
ACCCCCGTAACCCGTGGCGTACGGGTGGCATCATTTATGTGGATCCAGTCGATGATCCGCGATGATAAAAAGCGCGCCAT
GCTGTTCGAACTGGACACCAATATTCAGTCGCTGAAAAGCCGCCATGGCGAAAGTGAAGAGATCCTGTCGCTGCTCAATC
TTTATCATAATCTGCTGCGGGAATGGTCGGAGATCTGA

Upstream 100 bases:

>100_bases
ACCGTTATCACCCGGGCGAGCCAAGAACCTTCCTGCTCACGGCCAATATGCATTTCTGATTCAGATGTGGGGCGCAGGCC
CCACTTTTTGGAGAACTTGT

Downstream 100 bases:

>100_bases
CGCTTGAACTGCCCGAGTTCGTCCCTATATTAGCTACACTTAACTGTACAAGCATTGATATGGGGAGGACGATATGGCAT
CCGGTTGGGCTAACGATGAC

Product: hydroxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MMYHIPGVLSPKDVARFREQLEQAEWVDGRVTTGAQGAQVKNNQQVDTRSALYAALQNEVLNAVNQHALFFAAALPRTLS
TPLFNRYQNNETYGFHVDGAVRSHPQNGWMRTDLSATLFLSDPQSYDGGELVVNDTFGQHRVKLPAGDLVLYPSSSLHCV
TPVTRGVRVASFMWIQSMIRDDKKRAMLFELDTNIQSLKSRHGESEEILSLLNLYHNLLREWSEI

Sequences:

>Translated_225_residues
MMYHIPGVLSPKDVARFREQLEQAEWVDGRVTTGAQGAQVKNNQQVDTRSALYAALQNEVLNAVNQHALFFAAALPRTLS
TPLFNRYQNNETYGFHVDGAVRSHPQNGWMRTDLSATLFLSDPQSYDGGELVVNDTFGQHRVKLPAGDLVLYPSSSLHCV
TPVTRGVRVASFMWIQSMIRDDKKRAMLFELDTNIQSLKSRHGESEEILSLLNLYHNLLREWSEI
>Mature_225_residues
MMYHIPGVLSPKDVARFREQLEQAEWVDGRVTTGAQGAQVKNNQQVDTRSALYAALQNEVLNAVNQHALFFAAALPRTLS
TPLFNRYQNNETYGFHVDGAVRSHPQNGWMRTDLSATLFLSDPQSYDGGELVVNDTFGQHRVKLPAGDLVLYPSSSLHCV
TPVTRGVRVASFMWIQSMIRDDKKRAMLFELDTNIQSLKSRHGESEEILSLLNLYHNLLREWSEI

Specific function: Unknown

COG id: COG3128

COG function: function code S; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe2OG dioxygenase domain [H]

Homologues:

Organism=Escherichia coli, GI87081784, Length=225, Percent_Identity=98.2222222222222, Blast_Score=462, Evalue=1e-132,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005123
- InterPro:   IPR006620 [H]

Pfam domain/function: PF03171 2OG-FeII_Oxy [H]

EC number: 1.14.11.- [C]

Molecular weight: Translated: 25460; Mature: 25460

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMYHIPGVLSPKDVARFREQLEQAEWVDGRVTTGAQGAQVKNNQQVDTRSALYAALQNEV
CEEECCCCCCHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LNAVNQHALFFAAALPRTLSTPLFNRYQNNETYGFHVDGAVRSHPQNGWMRTDLSATLFL
HHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEECCHHHCCCCCCCEEECCEEEEEE
SDPQSYDGGELVVNDTFGQHRVKLPAGDLVLYPSSSLHCVTPVTRGVRVASFMWIQSMIR
ECCCCCCCCEEEEECCCCCEEEECCCCCEEEECCCCCEEECHHHHHHHHHHHHHHHHHHH
DDKKRAMLFELDTNIQSLKSRHGESEEILSLLNLYHNLLREWSEI
CHHHHEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMYHIPGVLSPKDVARFREQLEQAEWVDGRVTTGAQGAQVKNNQQVDTRSALYAALQNEV
CEEECCCCCCHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LNAVNQHALFFAAALPRTLSTPLFNRYQNNETYGFHVDGAVRSHPQNGWMRTDLSATLFL
HHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCEEEEECCHHHCCCCCCCEEECCEEEEEE
SDPQSYDGGELVVNDTFGQHRVKLPAGDLVLYPSSSLHCVTPVTRGVRVASFMWIQSMIR
ECCCCCCCCEEEEECCCCCEEEECCCCCEEEECCCCCEEECHHHHHHHHHHHHHHHHHHH
DDKKRAMLFELDTNIQSLKSRHGESEEILSLLNLYHNLLREWSEI
CHHHHEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]