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The map label for this gene is ompN [H]

Identifier: 218548975

GI number: 218548975

Start: 1670850

End: 1671983

Strand: Direct

Name: ompN [H]

Synonym: EFER_1623

Alternate gene names: 218548975

Gene position: 1670850-1671983 (Clockwise)

Preceding gene: 218548974

Following gene: 218548976

Centisome position: 36.41

GC content: 43.65

Gene sequence:

>1134_bases
ATGAAAAGAAAAGTACTGGCTCTCGTCATCCCTGCACTGCTTGCTGCAGGGGCAGTTCATGCGGCAGAAATTTATAATAA
AGACGGTAATAAGTTAGATCTTTATGGCAAGGTGGATGGTTTACATTATTTCTCTGATAGTTCAGCGAAAGATGGCGATC
AAAGTTATGCACGTCTTGGCTTTAAAGGTGAAACACAAATTAATGATCAGCTTACGGGTTTTGGTCAGTGGGAATACAAT
ATTCAGGCCAATAATACTGAGTCTTCAGAAAACCAATCATGGACTCGACTGGCATTCGCTGGATTGAAATTTGCCGACTA
CGGTTCTTTCGATTATGGCCGTAACTATGGTGTTATGTACGACGTTGAAGGCTGGACAGATATGCTGCCGGAATTTGGTG
GTGACTCTTATACTAATGCCGACAACTTTATGACGGGTCGTGCCAACGGCGTGGCAACTTATCGCAATACCGATTTCTTT
GGACTGGTTAACGGCCTGAATTTTGCCGTGCAGTATCAGGGTAATAACGAAGGCGCGACTAATGGTCAGGAAGGCACAAA
TAACGGACGCGATATTCGTCATGAAAACGGTGATGGCTGGGGTCTTTCCACCACTTACGATTTAGGCATGGGCTTTAGTG
CTGGTGCCGCTTATACCTCATCTGACCGTACCAATGACCAGGTGAATCATACTGCTGCTGGTGGCGATAAAGCTGATGCG
TGGACCGCAGGTTTGAAATACGATGCCAACAATATCTATCTCGCAACTATGTATTCTGAAACACGCAATATGACTCCGTT
TGGCGACAGCGATTATGCCGTGGCAAATAAAACTCAGAACTTTGAAGTAACCGCACAATACCAGTTCGATTTTGGTTTGC
GTCCGGCTGTTTCATTCCTGATGTCCAAAGGCCGTGATTTGAATGCTGTTGGTGGTGCGGATAACCCGGCAGGTGTCGAT
GATAAAGATTTGGTGAAATATGCTGATATTGGCGCGACTTACTTTTTCAACAAAAATATGTTTACCTATGTTGATTATAA
AATCAACCTGTTAGATGAAGATGATAGTTTTTACGCTGCTAATGGTATCAATACCGATGATATTGTAGCGTTGGGACTGG
TTTACCAGTTTTAA

Upstream 100 bases:

>100_bases
AATTGATATTTATCCTTTTATGGAACTTCTCCTTTAGCATGTTTTCACCCCCTTATACGGGGTAGTAACAGGTAGATAAT
AAAATAAAAGGAATATATCA

Downstream 100 bases:

>100_bases
ACCTATAGCCCGCCGGCAACGGCGGGTTTTTTCCTGTTGCCTTTTCCTGTTGAATTAATGTGAAAATGTGACCGTGGTCA
TTGTACATAATGTCGGATAA

Product: outer membrane pore protein N, non-specific

Products: NA

Alternate protein names: Porin ompN [H]

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MKRKVLALVIPALLAAGAVHAAEIYNKDGNKLDLYGKVDGLHYFSDSSAKDGDQSYARLGFKGETQINDQLTGFGQWEYN
IQANNTESSENQSWTRLAFAGLKFADYGSFDYGRNYGVMYDVEGWTDMLPEFGGDSYTNADNFMTGRANGVATYRNTDFF
GLVNGLNFAVQYQGNNEGATNGQEGTNNGRDIRHENGDGWGLSTTYDLGMGFSAGAAYTSSDRTNDQVNHTAAGGDKADA
WTAGLKYDANNIYLATMYSETRNMTPFGDSDYAVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGRDLNAVGGADNPAGVD
DKDLVKYADIGATYFFNKNMFTYVDYKINLLDEDDSFYAANGINTDDIVALGLVYQF

Sequences:

>Translated_377_residues
MKRKVLALVIPALLAAGAVHAAEIYNKDGNKLDLYGKVDGLHYFSDSSAKDGDQSYARLGFKGETQINDQLTGFGQWEYN
IQANNTESSENQSWTRLAFAGLKFADYGSFDYGRNYGVMYDVEGWTDMLPEFGGDSYTNADNFMTGRANGVATYRNTDFF
GLVNGLNFAVQYQGNNEGATNGQEGTNNGRDIRHENGDGWGLSTTYDLGMGFSAGAAYTSSDRTNDQVNHTAAGGDKADA
WTAGLKYDANNIYLATMYSETRNMTPFGDSDYAVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGRDLNAVGGADNPAGVD
DKDLVKYADIGATYFFNKNMFTYVDYKINLLDEDDSFYAANGINTDDIVALGLVYQF
>Mature_377_residues
MKRKVLALVIPALLAAGAVHAAEIYNKDGNKLDLYGKVDGLHYFSDSSAKDGDQSYARLGFKGETQINDQLTGFGQWEYN
IQANNTESSENQSWTRLAFAGLKFADYGSFDYGRNYGVMYDVEGWTDMLPEFGGDSYTNADNFMTGRANGVATYRNTDFF
GLVNGLNFAVQYQGNNEGATNGQEGTNNGRDIRHENGDGWGLSTTYDLGMGFSAGAAYTSSDRTNDQVNHTAAGGDKADA
WTAGLKYDANNIYLATMYSETRNMTPFGDSDYAVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGRDLNAVGGADNPAGVD
DKDLVKYADIGATYFFNKNMFTYVDYKINLLDEDDSFYAANGINTDDIVALGLVYQF

Specific function: Non-specific porin [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family [H]

Homologues:

Organism=Escherichia coli, GI1787641, Length=377, Percent_Identity=96.0212201591512, Blast_Score=704, Evalue=0.0,
Organism=Escherichia coli, GI1788544, Length=385, Percent_Identity=65.974025974026, Blast_Score=465, Evalue=1e-132,
Organism=Escherichia coli, GI1786436, Length=378, Percent_Identity=59.5238095238095, Blast_Score=448, Evalue=1e-127,
Organism=Escherichia coli, GI1787160, Length=388, Percent_Identity=56.701030927835, Blast_Score=402, Evalue=1e-113,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001897
- InterPro:   IPR001702 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 41365; Mature: 41365

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKVLALVIPALLAAGAVHAAEIYNKDGNKLDLYGKVDGLHYFSDSSAKDGDQSYARLG
CCCHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCHHHHCC
FKGETQINDQLTGFGQWEYNIQANNTESSENQSWTRLAFAGLKFADYGSFDYGRNYGVMY
CCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCEEECCCCCCCCCCCCEEE
DVEGWTDMLPEFGGDSYTNADNFMTGRANGVATYRNTDFFGLVNGLNFAVQYQGNNEGAT
ECCCHHHHHHHHCCCCCCCCCCEEECCCCCEEEEECCCEEEEECCCEEEEEEECCCCCCC
NGQEGTNNGRDIRHENGDGWGLSTTYDLGMGFSAGAAYTSSDRTNDQVNHTAAGGDKADA
CCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCCCCEECCCCCCCCCCCEEECCCCCCCE
WTAGLKYDANNIYLATMYSETRNMTPFGDSDYAVANKTQNFEVTAQYQFDFGLRPAVSFL
EECCEEECCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCEEEEEEEEECCCCHHHHHHH
MSKGRDLNAVGGADNPAGVDDKDLVKYADIGATYFFNKNMFTYVDYKINLLDEDDSFYAA
HHCCCCEEEECCCCCCCCCCHHHHHHHHCCCEEEEECCCEEEEEEEEEEEEECCCCEEEE
NGINTDDIVALGLVYQF
CCCCHHHEEEEEEEECC
>Mature Secondary Structure
MKRKVLALVIPALLAAGAVHAAEIYNKDGNKLDLYGKVDGLHYFSDSSAKDGDQSYARLG
CCCHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEEEECCEEEECCCCCCCCCCHHHHCC
FKGETQINDQLTGFGQWEYNIQANNTESSENQSWTRLAFAGLKFADYGSFDYGRNYGVMY
CCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCEEECCCCCCCCCCCCEEE
DVEGWTDMLPEFGGDSYTNADNFMTGRANGVATYRNTDFFGLVNGLNFAVQYQGNNEGAT
ECCCHHHHHHHHCCCCCCCCCCEEECCCCCEEEEECCCEEEEECCCEEEEEEECCCCCCC
NGQEGTNNGRDIRHENGDGWGLSTTYDLGMGFSAGAAYTSSDRTNDQVNHTAAGGDKADA
CCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCCCCEECCCCCCCCCCCEEECCCCCCCE
WTAGLKYDANNIYLATMYSETRNMTPFGDSDYAVANKTQNFEVTAQYQFDFGLRPAVSFL
EECCEEECCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCEEEEEEEEECCCCHHHHHHH
MSKGRDLNAVGGADNPAGVDDKDLVKYADIGATYFFNKNMFTYVDYKINLLDEDDSFYAA
HHCCCCEEEECCCCCCCCCCHHHHHHHHCCCEEEEECCCEEEEEEEEEEEEECCCCEEEE
NGINTDDIVALGLVYQF
CCCCHHHEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9642192 [H]