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The map label for this gene is ynfA

Identifier: 218548879

GI number: 218548879

Start: 1558268

End: 1558594

Strand: Direct

Name: ynfA

Synonym: EFER_1524

Alternate gene names: 218548879

Gene position: 1558268-1558594 (Clockwise)

Preceding gene: 218548876

Following gene: 218548880

Centisome position: 33.96

GC content: 48.01

Gene sequence:

>327_bases
ATGTTCAAAACTACACTGCTTTTTTTCATCACTGCGCTTTGCGAGATCATTGGCTGTTTTCTTCCCTGGTTGTGGTTGAA
ACGTAATGGCAGTATCTGGTTGTTGCTTCCGGCAGGAGTATCGCTGGCATTCTTTGTATGGTTGTTGACACTTCATCCTG
CAGCGAGCGGTCGTGTCTATGCCGCCTACGGCGGTGTGTATGTTTGTACTGCTTTACTCTGGTTACGATTTATCGATGGC
GTGAAACTGTCGCTTTATGACTGGTCCGGGGCATTAATTGCGCTCTGTGGCATGTTAATTATTGTTGCGGGATGGGGGCG
CGCTTAA

Upstream 100 bases:

>100_bases
TAGTTTCATAATCTGTCGAAATCCTACCCGTAATCAGGTCAGAACACGTCGGATTATGATGACGTATCATAACTATACCA
AATATAAATAAAGGAAAATG

Downstream 100 bases:

>100_bases
GCGCCTTTTTTGTGATCTATTAGTGCTTTTTTGATCATTATACTTGTATGGTAGTAGTTTAGTTGCGTAAATTCCCGGCA
TCTCCAGAACAGATGCAAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 108

Protein sequence:

>108_residues
MFKTTLLFFITALCEIIGCFLPWLWLKRNGSIWLLLPAGVSLAFFVWLLTLHPAASGRVYAAYGGVYVCTALLWLRFIDG
VKLSLYDWSGALIALCGMLIIVAGWGRA

Sequences:

>Translated_108_residues
MFKTTLLFFITALCEIIGCFLPWLWLKRNGSIWLLLPAGVSLAFFVWLLTLHPAASGRVYAAYGGVYVCTALLWLRFIDG
VKLSLYDWSGALIALCGMLIIVAGWGRA
>Mature_108_residues
MFKTTLLFFITALCEIIGCFLPWLWLKRNGSIWLLLPAGVSLAFFVWLLTLHPAASGRVYAAYGGVYVCTALLWLRFIDG
VKLSLYDWSGALIALCGMLIIVAGWGRA

Specific function: Unknown

COG id: COG1742

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0060 family

Homologues:

Organism=Escherichia coli, GI1787865, Length=107, Percent_Identity=90.6542056074766, Blast_Score=195, Evalue=5e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YNFA_ESCF3 (B7LRA1)

Other databases:

- EMBL:   CU928158
- RefSeq:   YP_002382670.1
- EnsemblBacteria:   EBESCT00000124860
- GeneID:   7121707
- GenomeReviews:   CU928158_GR
- KEGG:   efe:EFER_1524
- GeneTree:   EBGT00050000011198
- HOGENOM:   HBG313568
- ProtClustDB:   PRK02237
- BioCyc:   EFER585054:EFER_1524-MONOMER
- HAMAP:   MF_00010
- InterPro:   IPR003844

Pfam domain/function: PF02694 UPF0060

EC number: NA

Molecular weight: Translated: 11988; Mature: 11988

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x28f62844)-; HASH(0x27c00af0)-; HASH(0x293e73dc)-; HASH(0x27f865f4)-;

Cys/Met content:

3.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKTTLLFFITALCEIIGCFLPWLWLKRNGSIWLLLPAGVSLAFFVWLLTLHPAASGRVY
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEE
AAYGGVYVCTALLWLRFIDGVKLSLYDWSGALIALCGMLIIVAGWGRA
EECCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCH
>Mature Secondary Structure
MFKTTLLFFITALCEIIGCFLPWLWLKRNGSIWLLLPAGVSLAFFVWLLTLHPAASGRVY
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEE
AAYGGVYVCTALLWLRFIDGVKLSLYDWSGALIALCGMLIIVAGWGRA
EECCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA