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The map label for this gene is ydcS [H]

Identifier: 218548869

GI number: 218548869

Start: 1550064

End: 1551209

Strand: Direct

Name: ydcS [H]

Synonym: EFER_1514

Alternate gene names: 218548869

Gene position: 1550064-1551209 (Clockwise)

Preceding gene: 218548868

Following gene: 218548870

Centisome position: 33.78

GC content: 51.75

Gene sequence:

>1146_bases
ATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTGCGCTCACCATGACAATAATGACCGCTCACGCCGCCGAACCACCTAC
CAATTTAGATAAACCGGAAGGGCGACTGGATATTATCGCCTGGCCGGGATACATCGAACGCGGACAAACTGATAAACAAT
ACGACTGGGTAACGCAATTCGAAAAAGAGACAGGTTGCGCGGTGAATGTAAAAACCGCCGCGACGTCCGATGAAATGGTC
AGTCTGATGACCAAAGGGGGTTACGATCTGGTTACGGCATCCGGCGATGCCTCGCTGCGTTTGATTATGGGTAAACGCGT
GCAGCCGATTAATACCGCATTGATTCCCAACTGGAAGACGCTAGATCCGCGTGTGGTTAAAGGCGACTGGTTTAACGTTA
GTGGCAAAGTTTATGGCACACCTTACCAATGGGGGCCGAACCTGCTGATGTACAACACTAAAACCTTCCCGACCCCGCCG
GATAGCTGGCAAGTGGTTTTTGTTGCGCAGAATCTGCCGGACGGCAAGAGCAATAAAGGCCGCGTTCAGGCTTATGATGG
CCCTATTTATATTGCGGACGCTGCGTTGTTCGTTAAAGCCACTCAGCCGCAGTTGGGCATCAGCGATCCGTATCAACTCA
CCGAAGAACAGTACCAGGCGGTGCTGAAAGTGCTGCGCGATCAACATAGTTTGATCCATCGCTACTGGCATGACACTACC
GTGCAAATGAGTGATTTCAAAAACGAGGGTGTGGTTGCTTCCAGTGCATGGCCTTATCAGGCCAACGCCTTGAAAGCCGA
GGGGCAGTCTGTCGCTACCGTATTCCCGAAGGAGGGCGTTACCGGTTGGGCTGATACCACCATGCTACATAGCGAAGCGA
AACATCCGGTTTGCGCCTACAAATGGATGAACTGGTCATTAACGCCAAAAGTGCAGGGCGATGTGGCGGCCTGGTTTGGC
TCGTTACCGGTAGTGCCGGAAGGGTGTAAAGCCAGTCCGTTATTAGGCGAAAAAGGTTGTGAAACAAACGGTTTTAACTA
TTTCGATAAAATCGCCTTCTGGAAAACGCCTATAGCAGAAGGGGGCAAGTTTGTTCCCTACAGTCGCTGGACGCAGGATT
ACATTGCCATTATGGGCGGTCGCTAA

Upstream 100 bases:

>100_bases
GGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAAT
TACGACAGGAGTAAGACCTT

Downstream 100 bases:

>100_bases
CTTCGCTGGGGTGTTTTATGACGTACGCAGTGGAGTTTGACAACGTCTCGCGACTGTATGGTGATGTGCGCGCGGTAGAT
GGCGTCAGTATTGCGATAAA

Product: spermidine/putrescine ABC transporter periplasmic-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MSKTFARSSLCALTMTIMTAHAAEPPTNLDKPEGRLDIIAWPGYIERGQTDKQYDWVTQFEKETGCAVNVKTAATSDEMV
SLMTKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKTLDPRVVKGDWFNVSGKVYGTPYQWGPNLLMYNTKTFPTPP
DSWQVVFVAQNLPDGKSNKGRVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRDQHSLIHRYWHDTT
VQMSDFKNEGVVASSAWPYQANALKAEGQSVATVFPKEGVTGWADTTMLHSEAKHPVCAYKWMNWSLTPKVQGDVAAWFG
SLPVVPEGCKASPLLGEKGCETNGFNYFDKIAFWKTPIAEGGKFVPYSRWTQDYIAIMGGR

Sequences:

>Translated_381_residues
MSKTFARSSLCALTMTIMTAHAAEPPTNLDKPEGRLDIIAWPGYIERGQTDKQYDWVTQFEKETGCAVNVKTAATSDEMV
SLMTKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKTLDPRVVKGDWFNVSGKVYGTPYQWGPNLLMYNTKTFPTPP
DSWQVVFVAQNLPDGKSNKGRVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRDQHSLIHRYWHDTT
VQMSDFKNEGVVASSAWPYQANALKAEGQSVATVFPKEGVTGWADTTMLHSEAKHPVCAYKWMNWSLTPKVQGDVAAWFG
SLPVVPEGCKASPLLGEKGCETNGFNYFDKIAFWKTPIAEGGKFVPYSRWTQDYIAIMGGR
>Mature_380_residues
SKTFARSSLCALTMTIMTAHAAEPPTNLDKPEGRLDIIAWPGYIERGQTDKQYDWVTQFEKETGCAVNVKTAATSDEMVS
LMTKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKTLDPRVVKGDWFNVSGKVYGTPYQWGPNLLMYNTKTFPTPPD
SWQVVFVAQNLPDGKSNKGRVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRDQHSLIHRYWHDTTV
QMSDFKNEGVVASSAWPYQANALKAEGQSVATVFPKEGVTGWADTTMLHSEAKHPVCAYKWMNWSLTPKVQGDVAAWFGS
LPVVPEGCKASPLLGEKGCETNGFNYFDKIAFWKTPIAEGGKFVPYSRWTQDYIAIMGGR

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV [H]

COG id: COG0687

COG function: function code E; Spermidine/putrescine-binding periplasmic protein

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein potD/potF family [H]

Homologues:

Organism=Escherichia coli, GI1787711, Length=381, Percent_Identity=98.6876640419948, Blast_Score=784, Evalue=0.0,
Organism=Escherichia coli, GI1787078, Length=295, Percent_Identity=26.1016949152542, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR001188 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 42315; Mature: 42184

Theoretical pI: Translated: 7.49; Mature: 7.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTFARSSLCALTMTIMTAHAAEPPTNLDKPEGRLDIIAWPGYIERGQTDKQYDWVTQF
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHCCCCCCCCHHHHHHH
EKETGCAVNVKTAATSDEMVSLMTKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKT
HHCCCCEEEEEECCCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCCEEECCCCCC
LDPRVVKGDWFNVSGKVYGTPYQWGPNLLMYNTKTFPTPPDSWQVVFVAQNLPDGKSNKG
CCCEEEECCEEEECCEEEECCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCC
RVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRDQHSLIHRYWHDTT
EEEEECCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
VQMSDFKNEGVVASSAWPYQANALKAEGQSVATVFPKEGVTGWADTTMLHSEAKHPVCAY
EEECCCCCCCEEEECCCCCCCCCEECCCCEEEEECCCCCCCCCCHHHEEHHCCCCCEEEE
KWMNWSLTPKVQGDVAAWFGSLPVVPEGCKASPLLGEKGCETNGFNYFDKIAFWKTPIAE
EECCEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHC
GGKFVPYSRWTQDYIAIMGGR
CCCCCCCHHCCCCEEEEECCC
>Mature Secondary Structure 
SKTFARSSLCALTMTIMTAHAAEPPTNLDKPEGRLDIIAWPGYIERGQTDKQYDWVTQF
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHCCCCCCCCHHHHHHH
EKETGCAVNVKTAATSDEMVSLMTKGGYDLVTASGDASLRLIMGKRVQPINTALIPNWKT
HHCCCCEEEEEECCCHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCCEEECCCCCC
LDPRVVKGDWFNVSGKVYGTPYQWGPNLLMYNTKTFPTPPDSWQVVFVAQNLPDGKSNKG
CCCEEEECCEEEECCEEEECCCCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCC
RVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQYQAVLKVLRDQHSLIHRYWHDTT
EEEEECCCEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE
VQMSDFKNEGVVASSAWPYQANALKAEGQSVATVFPKEGVTGWADTTMLHSEAKHPVCAY
EEECCCCCCCEEEECCCCCCCCCEECCCCEEEEECCCCCCCCCCHHHEEHHCCCCCEEEE
KWMNWSLTPKVQGDVAAWFGSLPVVPEGCKASPLLGEKGCETNGFNYFDKIAFWKTPIAE
EECCEEECCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHC
GGKFVPYSRWTQDYIAIMGGR
CCCCCCCHHCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]