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The map label for this gene is ycbB [H]

Identifier: 218548441

GI number: 218548441

Start: 1108532

End: 1110379

Strand: Direct

Name: ycbB [H]

Synonym: EFER_1069

Alternate gene names: 218548441

Gene position: 1108532-1110379 (Clockwise)

Preceding gene: 218548440

Following gene: 218548442

Centisome position: 24.16

GC content: 51.24

Gene sequence:

>1848_bases
ATGTTGCTTAATACAATACGTGGTCGTCGGCTGTCGGCAATGAGTTTATGCCTGGCCGTAACATTCGCTCCACTGTTTAG
TGCGCAGGCCGATGAGCCTGAAATGATCCCAGGTGACAGCACAATTGCTATTACCGAACAGGGAGATGTCCAGCCGCAGG
CGCAAGCCACGGCGATGATGGCGGGGCTTCAACCGCTACCAGAAGGTGCGGCGGAGAAAGCCCGTACACAAATCGAATCT
CAATTACCCGCAGACTATAAGCCGGTTTATCGCAACCAGCTTGAGTTGTTATATGCTGCGCGTGATATGCAGCCGATGTG
GGAAAACCGTGAAGCGGTGAAAGCCTTTCAGCAACAACTGGCTGAAGTGGCAATAGCAGGATTTCAGCCACAATTTAACA
AGTGGGTGGAGCTACTGACGAATCCTGAAGTGAAAGGGATAGCACGTGATGTTGTGCTCTCGGATGCGATGATGGGGTAT
CTCCATTTTACCGCGAATATTCCGGTAAAAGGCACGCGCTGGCTTTACAGTAGCAAACCATATGCTTTAGCGACGCCGCC
TCTGTCGGTGATAAATCAGTGGCAGGTAGCACTGGATAACGGGCAATTGCCCGCATTCGTTGCAGGTCTGGCACCAAAAC
ATCCGCAATATACTGCAATGCATGAATCACTGTTGACCTTGTTGGCTGACACCAAACCGTGGCCACAGCTCACGGGGAAA
ACAACGCTGCGCCCCGGTCAGTGGAGTAACGACGTACCGGCATTGCGAGAGATATTGCAGCGTACAGGTATGCTGGAAGG
TGGCCCGAAGATAGCATTGCCAGGAGATGAAACCCCAGCAGAGGCTGTGGTAAGTCCATCGGCGGTGGCTGTTGAAACGT
CAGAGACAAAACCGTTAGACAAACAAACCGAACCACGCAAAAAAGCAGCTCCTGCAGTTCGGGCCGCCTATGATAAGGAG
CTGGTGGAGGCCGTTAAGCGTTTTCAGGCGTGGCAAGGATTGGGCGCAGATGGTGCAATTGGACCGGCAACACGTGACTG
GTTGAATGTCACTCCTGCACAACGTGCGGGTGTCCTGGCGCTTAATATTCAGCGATTGCGCTTACTGCCCGCAGAACTTT
CTACCGGTATCATGGTTAACATCCCGGCTTATTCGTTGGTTTATTACCAGGATGGCAATCAGGTGCTGGACTCGCGGGTA
ATTGTTGGTCGTCCTGACCGCAAAACGCCGATGATGAGCAGTGCCCTTAACAATGTGGTAGTGAACCCACCGTGGAACGT
ACCGCCAACACTGGCACGCAAAGATATTCTGCCAAAAGTGCGTAATGATCCCGGTTACCTTGAAAGCCATGGTTACACAG
TAATGCGTGGCTGGAACAGTAAAGAGGCCATTGATCCATGGCAAGTTGACTGGTCAACAATTACAGCCTCGAATCTGCCG
TTCCGTTTCCAGCAAGCGCCCGGCGCACGCAATTCACTGGGGCGTTATAAATTCAACATGCCAAGTACAGATGCTATTTA
TCTGCATGACACGCCTAACCACAATCTGTTCAAACGGGATACCCGGGCACTCAGTTCCGGTTGTGTGCGGGTAAATAAGG
CATCTGAACTGGCGAATATGCTGTTGCAGGATGCTGGCTGGAATGACAAACGTATCTCCGATGCGCTTAAGCAAGGTGAT
ACCCGATATGTCAACATCCGTCAGACCATCCCGGTTAATCTTTACTATCTGACGGCATTCGTGGGAGCTGATGGACGCAC
CCAATATCGTACAGATATTTACAATTATGATCTGCCTGCGCGATCCAGCTCGCAAATTGTCTCAAAAGCGGAACAATTAA
TCAGGTAA

Upstream 100 bases:

>100_bases
GGCTTACTCGTCATACTTCGTGTAGTACTGGCTTATGTGGATCGCCAACCGAACAAGCGATTCGGCTGTTTCTGAGTATG
ATTACAACAGGGGGCAAGGG

Downstream 100 bases:

>100_bases
ATGAAGTAGTTCGGGAAAATTAGTTGTCGTAATAATTAGCATGATTGGGGGCGATTCTCTGTAGCCCCCGTCACTGCTGG
GGGAGAGTCGCCTTGACGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 615; Mature: 615

Protein sequence:

>615_residues
MLLNTIRGRRLSAMSLCLAVTFAPLFSAQADEPEMIPGDSTIAITEQGDVQPQAQATAMMAGLQPLPEGAAEKARTQIES
QLPADYKPVYRNQLELLYAARDMQPMWENREAVKAFQQQLAEVAIAGFQPQFNKWVELLTNPEVKGIARDVVLSDAMMGY
LHFTANIPVKGTRWLYSSKPYALATPPLSVINQWQVALDNGQLPAFVAGLAPKHPQYTAMHESLLTLLADTKPWPQLTGK
TTLRPGQWSNDVPALREILQRTGMLEGGPKIALPGDETPAEAVVSPSAVAVETSETKPLDKQTEPRKKAAPAVRAAYDKE
LVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPAELSTGIMVNIPAYSLVYYQDGNQVLDSRV
IVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSKEAIDPWQVDWSTITASNLP
FRFQQAPGARNSLGRYKFNMPSTDAIYLHDTPNHNLFKRDTRALSSGCVRVNKASELANMLLQDAGWNDKRISDALKQGD
TRYVNIRQTIPVNLYYLTAFVGADGRTQYRTDIYNYDLPARSSSQIVSKAEQLIR

Sequences:

>Translated_615_residues
MLLNTIRGRRLSAMSLCLAVTFAPLFSAQADEPEMIPGDSTIAITEQGDVQPQAQATAMMAGLQPLPEGAAEKARTQIES
QLPADYKPVYRNQLELLYAARDMQPMWENREAVKAFQQQLAEVAIAGFQPQFNKWVELLTNPEVKGIARDVVLSDAMMGY
LHFTANIPVKGTRWLYSSKPYALATPPLSVINQWQVALDNGQLPAFVAGLAPKHPQYTAMHESLLTLLADTKPWPQLTGK
TTLRPGQWSNDVPALREILQRTGMLEGGPKIALPGDETPAEAVVSPSAVAVETSETKPLDKQTEPRKKAAPAVRAAYDKE
LVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPAELSTGIMVNIPAYSLVYYQDGNQVLDSRV
IVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSKEAIDPWQVDWSTITASNLP
FRFQQAPGARNSLGRYKFNMPSTDAIYLHDTPNHNLFKRDTRALSSGCVRVNKASELANMLLQDAGWNDKRISDALKQGD
TRYVNIRQTIPVNLYYLTAFVGADGRTQYRTDIYNYDLPARSSSQIVSKAEQLIR
>Mature_615_residues
MLLNTIRGRRLSAMSLCLAVTFAPLFSAQADEPEMIPGDSTIAITEQGDVQPQAQATAMMAGLQPLPEGAAEKARTQIES
QLPADYKPVYRNQLELLYAARDMQPMWENREAVKAFQQQLAEVAIAGFQPQFNKWVELLTNPEVKGIARDVVLSDAMMGY
LHFTANIPVKGTRWLYSSKPYALATPPLSVINQWQVALDNGQLPAFVAGLAPKHPQYTAMHESLLTLLADTKPWPQLTGK
TTLRPGQWSNDVPALREILQRTGMLEGGPKIALPGDETPAEAVVSPSAVAVETSETKPLDKQTEPRKKAAPAVRAAYDKE
LVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPAELSTGIMVNIPAYSLVYYQDGNQVLDSRV
IVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSKEAIDPWQVDWSTITASNLP
FRFQQAPGARNSLGRYKFNMPSTDAIYLHDTPNHNLFKRDTRALSSGCVRVNKASELANMLLQDAGWNDKRISDALKQGD
TRYVNIRQTIPVNLYYLTAFVGADGRTQYRTDIYNYDLPARSSSQIVSKAEQLIR

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=615, Percent_Identity=91.219512195122, Blast_Score=1165, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 68096; Mature: 68096

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLNTIRGRRLSAMSLCLAVTFAPLFSAQADEPEMIPGDSTIAITEQGDVQPQAQATAMM
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHH
AGLQPLPEGAAEKARTQIESQLPADYKPVYRNQLELLYAARDMQPMWENREAVKAFQQQL
HCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHH
AEVAIAGFQPQFNKWVELLTNPEVKGIARDVVLSDAMMGYLHFTANIPVKGTRWLYSSKP
HHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCCCEEEECCCC
YALATPPLSVINQWQVALDNGQLPAFVAGLAPKHPQYTAMHESLLTLLADTKPWPQLTGK
CEEECCCHHHHCCEEEEECCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
TTLRPGQWSNDVPALREILQRTGMLEGGPKIALPGDETPAEAVVSPSAVAVETSETKPLD
CCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHCCCCEEEEECCCCCCCC
KQTEPRKKAAPAVRAAYDKELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLA
CCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHCCEEE
LNIQRLRLLPAELSTGIMVNIPAYSLVYYQDGNQVLDSRVIVGRPDRKTPMMSSALNNVV
EEHHHHHEEHHHHCCCEEEECCCEEEEEEECCCEEHHCEEEEECCCCCCCHHHHHHCCEE
VNPPWNVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSKEAIDPWQVDWSTITASNLP
ECCCCCCCHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCCCCCCCCCCCCEEEEECCCC
FRFQQAPGARNSLGRYKFNMPSTDAIYLHDTPNHNLFKRDTRALSSGCVRVNKASELANM
EEEECCCCCCCCCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHHHCCEEECHHHHHHHH
LLQDAGWNDKRISDALKQGDTRYVNIRQTIPVNLYYLTAFVGADGRTQYRTDIYNYDLPA
HHHHCCCCHHHHHHHHHCCCCEEEEEEECCCEEEEEEEEEECCCCCCEEEHEEECCCCCC
RSSSQIVSKAEQLIR
CCHHHHHHHHHHHCC
>Mature Secondary Structure
MLLNTIRGRRLSAMSLCLAVTFAPLFSAQADEPEMIPGDSTIAITEQGDVQPQAQATAMM
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHH
AGLQPLPEGAAEKARTQIESQLPADYKPVYRNQLELLYAARDMQPMWENREAVKAFQQQL
HCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHH
AEVAIAGFQPQFNKWVELLTNPEVKGIARDVVLSDAMMGYLHFTANIPVKGTRWLYSSKP
HHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEEEECCCCCCCEEEECCCC
YALATPPLSVINQWQVALDNGQLPAFVAGLAPKHPQYTAMHESLLTLLADTKPWPQLTGK
CEEECCCHHHHCCEEEEECCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
TTLRPGQWSNDVPALREILQRTGMLEGGPKIALPGDETPAEAVVSPSAVAVETSETKPLD
CCCCCCCCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHCCCCEEEEECCCCCCCC
KQTEPRKKAAPAVRAAYDKELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLA
CCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCHHHCCEEE
LNIQRLRLLPAELSTGIMVNIPAYSLVYYQDGNQVLDSRVIVGRPDRKTPMMSSALNNVV
EEHHHHHEEHHHHCCCEEEECCCEEEEEEECCCEEHHCEEEEECCCCCCCHHHHHHCCEE
VNPPWNVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSKEAIDPWQVDWSTITASNLP
ECCCCCCCHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCCCCCCCCCCCCEEEEECCCC
FRFQQAPGARNSLGRYKFNMPSTDAIYLHDTPNHNLFKRDTRALSSGCVRVNKASELANM
EEEECCCCCCCCCCCEEECCCCCCEEEEECCCCCCHHHHHHHHHHHCCEEECHHHHHHHH
LLQDAGWNDKRISDALKQGDTRYVNIRQTIPVNLYYLTAFVGADGRTQYRTDIYNYDLPA
HHHHCCCCHHHHHHHHHCCCCEEEEEEECCCEEEEEEEEEECCCCCCEEEHEEECCCCCC
RSSSQIVSKAEQLIR
CCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]