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The map label for this gene is ybiR [H]

Identifier: 218548339

GI number: 218548339

Start: 988149

End: 989264

Strand: Direct

Name: ybiR [H]

Synonym: EFER_0961

Alternate gene names: 218548339

Gene position: 988149-989264 (Clockwise)

Preceding gene: 218548338

Following gene: 218548341

Centisome position: 21.53

GC content: 52.15

Gene sequence:

>1116_bases
ATGAGTTTTCCTCTTTTACGATCGCTTCAGCGCGATCATTTTTTTCAACTTTTAGTTCTTGTTGGTATTGGCCTAAGTTT
TTTTGTTCCCTTTACCCCAAAATCCTGGCCTGGCGCCATTGACTGGCACACCATCATTACTCTCAGTGGGCTAATGTTGT
TGACCAAGGGCGTGGAGTTAAGTGGCTATTTTGATGTGCTGGGTCGCAAAATGGTGCGCCGCTTTGCCACAGAGCGTCGG
CTGGCAATGTTTATGGTACTTGCAGCGGCGCTGCTTTCTACCTTTCTGACCAACGATGTCGCGCTGTTTATTGTTGTTCC
GCTGACGATCACGCTCAAAAGACTGTGTGAGATCCCGGTGAATCGGCTGATTATTTTTGAGGCCCTGGCGGTGAACGCCG
GATCGCTCCTGACGCCGATTGGCAATCCACAAAATATCCTTATCTGGGGACGTTCTGGCCTTTCGTTTGCCGGGTTTATT
GCCCAAATGGCACCGCTGGCGGGGGCGATGATGGTGACTTTGTTGGCATTGTGCTGGTGTTGTTTCCCTGGAAAGGCGCT
GCAATACCATACGGGGGCGCAAACACCAGAATGGAAACCGCGGCTGGTGTGGAGTTGTCTGGGGCTGTATATCGTCTTTT
TGACGGCGCTGGAGTTAAAACAAGAGCTGTGGGGACTGGTGATTGTGGCGGCGGGCTTTGCGCTGCTGGCACGTCGCGTG
GTGCTCAGTGTGGACTGGACGCTGCTGCTGGTGTTCATGGCGATGTTTATCGACGTCCATTTACTAACCCAACTGCCAGC
TTTGCAGGGCGTCTTGAGTAACGTGAGTCATTTATCCGAACCCGGATTATGGTTAACGGCAATCGGTTTATCGCAGGTGA
TCAGTAACGTGCCGGGTACTATTTTGCTGCTGAACTATGTACCGCCGTCGTTGCTGCTGGCCTGGGCGGTGAATGTTGGC
GGTTTTGGCTTGCTGCCTGGCTCACTGGCGAACTTGATTGCGTTACGCATGGCGAATGATCGCCGTATCTGGTGGCGTTT
TCATCTTTACTCGATACCCATGTTACTGTGGGCGGCTCTGGTAGGATATGGGTTGATTCTACTCAAGGCTGGGTAA

Upstream 100 bases:

>100_bases
GCCCGGAAATTGCCCGCCGTGATGCTGAGGGTATGGAACATCATGTCAGTGCAGAAACACTTGAAGCGTTCCGTCTGTTT
ATTCAACAGCAGGGCGTAAA

Downstream 100 bases:

>100_bases
GGGCTGGCAAATAAAAAAGGCGGATTATCAGTCCGCCTTTTACATTCAGTCAGTGAAGATTAATTCAGACGAACGGGCAT
CCCGGAACGGTTTTTAATCG

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MSFPLLRSLQRDHFFQLLVLVGIGLSFFVPFTPKSWPGAIDWHTIITLSGLMLLTKGVELSGYFDVLGRKMVRRFATERR
LAMFMVLAAALLSTFLTNDVALFIVVPLTITLKRLCEIPVNRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFI
AQMAPLAGAMMVTLLALCWCCFPGKALQYHTGAQTPEWKPRLVWSCLGLYIVFLTALELKQELWGLVIVAAGFALLARRV
VLSVDWTLLLVFMAMFIDVHLLTQLPALQGVLSNVSHLSEPGLWLTAIGLSQVISNVPGTILLLNYVPPSLLLAWAVNVG
GFGLLPGSLANLIALRMANDRRIWWRFHLYSIPMLLWAALVGYGLILLKAG

Sequences:

>Translated_371_residues
MSFPLLRSLQRDHFFQLLVLVGIGLSFFVPFTPKSWPGAIDWHTIITLSGLMLLTKGVELSGYFDVLGRKMVRRFATERR
LAMFMVLAAALLSTFLTNDVALFIVVPLTITLKRLCEIPVNRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFI
AQMAPLAGAMMVTLLALCWCCFPGKALQYHTGAQTPEWKPRLVWSCLGLYIVFLTALELKQELWGLVIVAAGFALLARRV
VLSVDWTLLLVFMAMFIDVHLLTQLPALQGVLSNVSHLSEPGLWLTAIGLSQVISNVPGTILLLNYVPPSLLLAWAVNVG
GFGLLPGSLANLIALRMANDRRIWWRFHLYSIPMLLWAALVGYGLILLKAG
>Mature_370_residues
SFPLLRSLQRDHFFQLLVLVGIGLSFFVPFTPKSWPGAIDWHTIITLSGLMLLTKGVELSGYFDVLGRKMVRRFATERRL
AMFMVLAAALLSTFLTNDVALFIVVPLTITLKRLCEIPVNRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFIA
QMAPLAGAMMVTLLALCWCCFPGKALQYHTGAQTPEWKPRLVWSCLGLYIVFLTALELKQELWGLVIVAAGFALLARRVV
LSVDWTLLLVFMAMFIDVHLLTQLPALQGVLSNVSHLSEPGLWLTAIGLSQVISNVPGTILLLNYVPPSLLLAWAVNVGG
FGLLPGSLANLIALRMANDRRIWWRFHLYSIPMLLWAALVGYGLILLKAG

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CitM (TC 2.A.11) transporter family [H]

Homologues:

Organism=Homo sapiens, GI157266326, Length=151, Percent_Identity=33.7748344370861, Blast_Score=66, Evalue=5e-11,
Organism=Escherichia coli, GI1787039, Length=368, Percent_Identity=94.5652173913043, Blast_Score=669, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004680 [H]

Pfam domain/function: PF03600 CitMHS [H]

EC number: NA

Molecular weight: Translated: 40906; Mature: 40775

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFPLLRSLQRDHFFQLLVLVGIGLSFFVPFTPKSWPGAIDWHTIITLSGLMLLTKGVEL
CCCHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
SGYFDVLGRKMVRRFATERRLAMFMVLAAALLSTFLTNDVALFIVVPLTITLKRLCEIPV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCH
NRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFIAQMAPLAGAMMVTLLALCWC
HHHHHHHHHHHCCCCEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
CFPGKALQYHTGAQTPEWKPRLVWSCLGLYIVFLTALELKQELWGLVIVAAGFALLARRV
CCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLSVDWTLLLVFMAMFIDVHLLTQLPALQGVLSNVSHLSEPGLWLTAIGLSQVISNVPGT
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCCE
ILLLNYVPPSLLLAWAVNVGGFGLLPGSLANLIALRMANDRRIWWRFHLYSIPMLLWAAL
EEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHH
VGYGLILLKAG
HHCCEEEEECC
>Mature Secondary Structure 
SFPLLRSLQRDHFFQLLVLVGIGLSFFVPFTPKSWPGAIDWHTIITLSGLMLLTKGVEL
CCHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
SGYFDVLGRKMVRRFATERRLAMFMVLAAALLSTFLTNDVALFIVVPLTITLKRLCEIPV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCH
NRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFIAQMAPLAGAMMVTLLALCWC
HHHHHHHHHHHCCCCEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
CFPGKALQYHTGAQTPEWKPRLVWSCLGLYIVFLTALELKQELWGLVIVAAGFALLARRV
CCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLSVDWTLLLVFMAMFIDVHLLTQLPALQGVLSNVSHLSEPGLWLTAIGLSQVISNVPGT
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHCCCCE
ILLLNYVPPSLLLAWAVNVGGFGLLPGSLANLIALRMANDRRIWWRFHLYSIPMLLWAAL
EEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHH
VGYGLILLKAG
HHCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]