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The map label for this gene is quuD [H]

Identifier: 218547988

GI number: 218547988

Start: 603425

End: 603802

Strand: Direct

Name: quuD [H]

Synonym: EFER_0594

Alternate gene names: 218547988

Gene position: 603425-603802 (Clockwise)

Preceding gene: 218547987

Following gene: 218547990

Centisome position: 13.15

GC content: 41.27

Gene sequence:

>378_bases
TTGTGGAGAAAGTTGATGCGTGATATTCAGATGGTTCTGGATCGTTGGGGAGCATGGGCGGCGAGTGATAGTTCTGGAGT
AGACTATTCTCCTATAGCTGCTGGGTTTAAAGGGCTTCTTCCCTATACAAGCAAAACACGTCAGGCTTGTTCAGATAGTG
ATGCATTAATTATTGAAGGTTGTCTTGCTCTTCTTAAGAAGAGAAAACCGTATGAGCACTCTCTGATTGTGGCTCATTAC
CTGTATGGCATCTCGAAAAGGAAGATAGCAAAAGCATACAAAAAAGATGAGAAATTGATACGTATAGAGATACAGTTGGC
TGAAGGGTTTATAGATGGTTGTCTCTCGATGCTGGATATTCGTTTAGAAATGGAGTAA

Upstream 100 bases:

>100_bases
ATGCAGATACCGTGGCATTTGAAGAGAAGTATGGCTCCCAACTGGAGCTGATATTTCGTTTTATCGATCGTGCGCTGGCA
ACTGGCGTGCTGGCCTGATT

Downstream 100 bases:

>100_bases
TAAAATTAAGGCAGCAACATAGAGTTTAACTTTGTTGCTGCGTAACAGATTTAATCTGGCATTATGGTAGATAATTGTGG
GCTAGGTTTAACCCCGTAGG

Product: antitermination protein Q from phage origin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MWRKLMRDIQMVLDRWGAWAASDSSGVDYSPIAAGFKGLLPYTSKTRQACSDSDALIIEGCLALLKKRKPYEHSLIVAHY
LYGISKRKIAKAYKKDEKLIRIEIQLAEGFIDGCLSMLDIRLEME

Sequences:

>Translated_125_residues
MWRKLMRDIQMVLDRWGAWAASDSSGVDYSPIAAGFKGLLPYTSKTRQACSDSDALIIEGCLALLKKRKPYEHSLIVAHY
LYGISKRKIAKAYKKDEKLIRIEIQLAEGFIDGCLSMLDIRLEME
>Mature_125_residues
MWRKLMRDIQMVLDRWGAWAASDSSGVDYSPIAAGFKGLLPYTSKTRQACSDSDALIIEGCLALLKKRKPYEHSLIVAHY
LYGISKRKIAKAYKKDEKLIRIEIQLAEGFIDGCLSMLDIRLEME

Specific function: Positively regulate expression of some phage genes. Bacterial host RNA polymerase modified by antitermination proteins transcribes through termination sites that otherwise prevent expression of the regulated genes [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage antitermination Q type 1 family [H]

Homologues:

Organism=Escherichia coli, GI1786763, Length=120, Percent_Identity=50, Blast_Score=116, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010534 [H]

Pfam domain/function: PF06530 Phage_antitermQ [H]

EC number: NA

Molecular weight: Translated: 14228; Mature: 14228

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWRKLMRDIQMVLDRWGAWAASDSSGVDYSPIAAGFKGLLPYTSKTRQACSDSDALIIEG
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHCCCCCHHHHHH
CLALLKKRKPYEHSLIVAHYLYGISKRKIAKAYKKDEKLIRIEIQLAEGFIDGCLSMLDI
HHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHH
RLEME
HHCCC
>Mature Secondary Structure
MWRKLMRDIQMVLDRWGAWAASDSSGVDYSPIAAGFKGLLPYTSKTRQACSDSDALIIEG
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHCCCCCHHHHHH
CLALLKKRKPYEHSLIVAHYLYGISKRKIAKAYKKDEKLIRIEIQLAEGFIDGCLSMLDI
HHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHH
RLEME
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8648624; 9278503 [H]