Click here to switch to the map view.

The map label for this gene is ybcF [H]

Identifier: 218547958

GI number: 218547958

Start: 582618

End: 583511

Strand: Direct

Name: ybcF [H]

Synonym: EFER_0561

Alternate gene names: 218547958

Gene position: 582618-583511 (Clockwise)

Preceding gene: 218547957

Following gene: 218547963

Centisome position: 12.7

GC content: 57.38

Gene sequence:

>894_bases
ATGAAAACACTGGTTGTAGCTCTTGGGGGCAATGCCTTACTCCAGCGCGGTGAGGCGCTGACGGCAGAGAATCAATATCG
CAATATTGCCAGTGCTGTTCCCGCGCTGGCGCGCCTGGCGCGTGCTTATCGACTGGCGATTGTTCACGGCAACGGGCCAC
AGGTGGGGCTGCTGGCGTTACAGAATCTGGCGTGGAAAGAGGTAGAACCGTATCCGCTGGATGTGCTGGTGGCGGAAAGC
CAGGGGATGATTGGCTATATGCTGGCGCAGAGCTTGAGCGCACAGCCGCAGATGCCGCCTGTCACGACGGTGCTGACGCG
CATTGAAGTTTCGCCTGATGATCCGGCGTTTTTGCAGCCAGAGAAGTTTATCGGCCCGGTTTATCAGCCAGAAGAACAAG
AGGCACTGGAAACGGCTTACGGCTGGCAAATGAAGCGTGATGGCAAATATTTACGCCGGGTGGTGGCATCTCCCCAGCCT
CGTAAAATTCTCGACAGCGAAGCCATCGAGTTGTTGCTCAAAGAGGGGCATGTGGTGATTTGCAGTGGCGGCGGCGGTGT
TCCGGTGACGGATGACGGAGCAGGGAGTGAAGCGGTGATTGATAAAGATCTCGCCGCGGCGTTGCTTGCCGAGCAGATTA
ATGCCGATGGACTGGTGATCCTCACCGATGCTGACGCGGTATATGAAAACTGGGGAACGCCGCAGCAACGTGCCATTCGC
CATGCCACACCGGATGAGTTAGCGCCATTTGCCAAAGCCGATGGGGCGATGGGACCGAAGGTAACGGCGGTAAGTGGCTA
TGTCAGAAGCCGTGGTAAACCTGCGTGGATTGGGGCGTTATCGCGGATTGAAGAGACGCTGGCGGGCGAAGCGGGGACCT
GTATTTCGCTTTAG

Upstream 100 bases:

>100_bases
CTGCTGTGGCGATTGATTCGCTGCTGGCGCTGGGGCATACGTCAGGGGCCGATACGCTGCTGGGGTTCTGGCTTGGTCAA
CAATTATTACAAGGAACACC

Downstream 100 bases:

>100_bases
TCGTAGGCATTCGGTATTTGTGCCTGATGCGATGCTGATTATCCGACCAGGAAATATCACTGTTTCCACAGGCCGGATAA
GGCGTTCACGCCGCATCCGG

Product: carbamate kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARAYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAES
QGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALETAYGWQMKRDGKYLRRVVASPQP
RKILDSEAIELLLKEGHVVICSGGGGVPVTDDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIR
HATPDELAPFAKADGAMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL

Sequences:

>Translated_297_residues
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARAYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAES
QGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALETAYGWQMKRDGKYLRRVVASPQP
RKILDSEAIELLLKEGHVVICSGGGGVPVTDDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIR
HATPDELAPFAKADGAMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL
>Mature_297_residues
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARAYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAES
QGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALETAYGWQMKRDGKYLRRVVASPQP
RKILDSEAIELLLKEGHVVICSGGGGVPVTDDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIR
HATPDELAPFAKADGAMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL

Specific function: Arginine degradation via arginine deiminase; third step. [C]

COG id: COG0549

COG function: function code E; Carbamate kinase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carbamate kinase family [H]

Homologues:

Organism=Escherichia coli, GI1786732, Length=297, Percent_Identity=98.6531986531986, Blast_Score=592, Evalue=1e-171,
Organism=Escherichia coli, GI1789238, Length=312, Percent_Identity=39.7435897435897, Blast_Score=174, Evalue=5e-45,
Organism=Escherichia coli, GI1786516, Length=313, Percent_Identity=38.3386581469649, Blast_Score=146, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001048
- InterPro:   IPR003964 [H]

Pfam domain/function: PF00696 AA_kinase [H]

EC number: =2.7.2.2 [H]

Molecular weight: Translated: 31657; Mature: 31657

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARAYRLAIVHGNGPQVGLLAL
CCEEEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHH
QNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQP
HHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHEEEEECCCCCCCCCC
EKFIGPVYQPEEQEALETAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVI
HHHCCCCCCCCHHHHHHHHHCCEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEE
CSGGGGVPVTDDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIR
EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCHHHHHHH
HATPDELAPFAKADGAMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL
CCCHHHHCCHHHCCCCCCCEEEHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEECC
>Mature Secondary Structure
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARAYRLAIVHGNGPQVGLLAL
CCEEEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHH
QNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQP
HHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHEEEEECCCCCCCCCC
EKFIGPVYQPEEQEALETAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVI
HHHCCCCCCCCHHHHHHHHHCCEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEE
CSGGGGVPVTDDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIR
EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCHHHHHHH
HATPDELAPFAKADGAMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL
CCCHHHHCCHHHCCCCCCCEEEHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]