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The map label for this gene is rimM [H]

Identifier: 218547873

GI number: 218547873

Start: 469311

End: 469859

Strand: Direct

Name: rimM [H]

Synonym: EFER_0464

Alternate gene names: 218547873

Gene position: 469311-469859 (Clockwise)

Preceding gene: 218547872

Following gene: 218547874

Centisome position: 10.23

GC content: 49.0

Gene sequence:

>549_bases
ATGAGCAAACAACTCACCGCGCAAGCACCTGTTGATCCCATCGTTTTGGGAAAAATGGGTTCGTCTTACGGTATTCGTGG
GTGGCTCAGAGTGTTTTCTTCCACCGAAGACGCCGAAAGCATTTTTGACTATCAGCCCTGGTTTATCCAGAAGGCGGGTC
AGTGGCAGCAAGTCCAGCTGGAAAGCTGGAAGCACCACAATCAGGACATGATCATCAAGCTGAAAGGCGTTGACGATCGT
GATGCGGCGAACCTGCTGACGAATTGTGAAATTGTCGTGGATTCATCGCAGCTGCCTCAGCTTGAAGAGGGTGACTACTA
CTGGAAAGACCTGATGGGCTGCCAGGTAGTAACCACTGAAGGCTACGATCTCGGTAAAGTCATTGACATGATGGAAACCG
GATCCAATGACGTTCTCGTCATTAAGGCAAACCTGAAGGATGCGTTTGGTATCAAGGAACGTCTCGTACCGTTCCTCGAT
GGGCAGGTTATCAAGAAAGTCGATCTCACTACTCGTTCAATCGAAGTAGATTGGGATCCTGGTTTTTAA

Upstream 100 bases:

>100_bases
CATCGCTCACTGGGTTGGCCAGGGCGCAACTATTTCTGATCGCGTTGCTGCGCTGATCAAAGAAGTAAACAAAGCAGCTT
AATCTGTCACGGTGGTCATG

Downstream 100 bases:

>100_bases
ACCACCGGATAAACGGTAAAAGACGGCGCTATGTGGATTGGCATAATTAGCCTGTTTCCTGAAATGTTCCGCGCAATTAC
CGATTACGGGGTAACTGGCC

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVDDR
DAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLD
GQVIKKVDLTTRSIEVDWDPGF

Sequences:

>Translated_182_residues
MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVDDR
DAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLD
GQVIKKVDLTTRSIEVDWDPGF
>Mature_181_residues
SKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVDDRD
AANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTEGYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLDG
QVIKKVDLTTRSIEVDWDPGF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=182, Percent_Identity=99.4505494505495, Blast_Score=374, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 20620; Mature: 20488

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL
CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHCCCCCEEECCCCCEEEEE
ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE
HHHCCCCCCEEEEEECCCCCCHHHHHCCCEEEECCCCCCCCCCCCCHHHHHCCCEEEEEC
GYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP
CCCHHHHHHHHHCCCCCEEEEEECCCCHHCHHHHHHHHCCCCEEEEEECEEEEEEEECCC
GF
CC
>Mature Secondary Structure 
SKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQPWFIQKAGQWQQVQL
CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHCCCCCEEECCCCCEEEEE
ESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLEEGDYYWKDLMGCQVVTTE
HHHCCCCCCEEEEEECCCCCCHHHHHCCCEEEECCCCCCCCCCCCCHHHHHCCCEEEEEC
GYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQVIKKVDLTTRSIEVDWDP
CCCHHHHHHHHHCCCCCEEEEEECCCCHHCHHHHHHHHCCCCEEEEEECEEEEEEEECCC
GF
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA