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The map label for this gene is stpA [H]

Identifier: 218547816

GI number: 218547816

Start: 415825

End: 416226

Strand: Direct

Name: stpA [H]

Synonym: EFER_0403

Alternate gene names: 218547816

Gene position: 415825-416226 (Clockwise)

Preceding gene: 218547814

Following gene: 218547819

Centisome position: 9.06

GC content: 45.52

Gene sequence:

>402_bases
ATGTCTTTAATGTTACAGAATTTAAATAATATCCGCACTCTACGTGCTATGGCTCGCGAATTCTCCATTGACGTTCTTGA
AGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAAGAACTTCTGCAGCGTGAGCAGGCAGAGC
GTCAGGAAAAAATTAATACCTGGCTGGAGCTGATGAAAGCCGATGGAATTAACCCTTCTGACTTATTAGGCGGCGAAGGT
TCTGCACCTAAAGCAGCTAAAAAACGCCAGCCGCGTCCGGCGAAATATAAATTCACTGATGTTAACGGTGAAACTAAAAC
CTGGACCGGTCAGGGCCGTACACCGAAGCCAATTGCTCAGGCGCTGGCAGAGGGTAAATCTCTCGACGATTTCCTGATCT
AA

Upstream 100 bases:

>100_bases
TATGTAAATATATTTAAGAGTATAGAAAAATAATAAATTTTCGAATACACTATGCCGCGAAATAGTTTTTGGTACTTTTC
GTTAGAAGGTTTTTAGTATT

Downstream 100 bases:

>100_bases
TTACTGAGGCCGGATGCCGCTGCTATGGCGCGTCCGGCGTCGCTTCTCAAGCTTGATGGTTCCACGGCATCTTATCTAAC
AACCTTGCCATCCCACAAAA

Product: DNA binding protein, nucleoid-associated

Products: NA

Alternate protein names: H-NS homolog stpA [H]

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MSLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELLQREQAERQEKINTWLELMKADGINPSDLLGGEG
SAPKAAKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI

Sequences:

>Translated_133_residues
MSLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELLQREQAERQEKINTWLELMKADGINPSDLLGGEG
SAPKAAKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI
>Mature_132_residues
SLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELLQREQAERQEKINTWLELMKADGINPSDLLGGEGS
APKAAKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQALAEGKSLDDFLI

Specific function: It may act in a fashion similar to H-NS proteins [H]

COG id: COG2916

COG function: function code R; DNA-binding protein H-NS

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the histone-like protein H-NS family [H]

Homologues:

Organism=Escherichia coli, GI1789023, Length=134, Percent_Identity=88.8059701492537, Blast_Score=218, Evalue=1e-58,
Organism=Escherichia coli, GI1787489, Length=135, Percent_Identity=57.037037037037, Blast_Score=124, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001801 [H]

Pfam domain/function: PF00816 Histone_HNS [H]

EC number: NA

Molecular weight: Translated: 15231; Mature: 15099

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELLQREQAERQEKINT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLELMKADGINPSDLLGGEGSAPKAAKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQ
HHHHHHHCCCCHHHHCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHH
ALAEGKSLDDFLI
HHHCCCCCHHHCC
>Mature Secondary Structure 
SLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEELLQREQAERQEKINT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLELMKADGINPSDLLGGEGSAPKAAKKRQPRPAKYKFTDVNGETKTWTGQGRTPKPIAQ
HHHHHHHCCCCHHHHCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHH
ALAEGKSLDDFLI
HHHCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]