Click here to switch to the map view.

The map label for this gene is yqaA [H]

Identifier: 218547793

GI number: 218547793

Start: 393460

End: 393888

Strand: Direct

Name: yqaA [H]

Synonym: EFER_0380

Alternate gene names: 218547793

Gene position: 393460-393888 (Clockwise)

Preceding gene: 218547792

Following gene: 218547794

Centisome position: 8.57

GC content: 48.48

Gene sequence:

>429_bases
GTGAGTGAAGCTTTATCGCTTTTCTCGTTGTTTGCCAGTAGTTTCCTCAGCGCTACACTATTACCCGGTAATTCCGAAGT
CGTGCTGGTTGCAATGTTGCTTTCCGGGGTAAGTCATCCCTGGGTTTTAGTTTTAACAGCAACAATGGGTAATAGCCTTG
GAGGGTTAACTAACGTTATCCTTGGGCGTTTCTTTCCATTGCGTAAAACATCGCGCTGGCAAGAGAAAGCTACCGGCTGG
CTGAAACGCTATGGTGCAGTCACGCTATTATTAAGCTGGATGCCCGTGGTTGGCGATTTACTGTGTCTGTTAGCGGGATG
GATGCGCATCTCCTGGGGGCCAGTAATCTTTTTTTTGTGCCTTGGTAAAGCGTTACGCTATGTTGCAGTTGCAGCAGCGA
CCGTTCAGGGCATGATATGGTGGCACTAA

Upstream 100 bases:

>100_bases
TGGGCGTGCAACCAACGCAGTGTGTGGTCTTTGAAGATGCCGATTTCGGTATTCAGGCGGCCCGTGCTGCAGGCATGGAC
GCTGTGGATGTTCGCTTGCT

Downstream 100 bases:

>100_bases
TTGTAGGCCTGCACACATGGTCACCATTACAGTTATGCTAATTAAAACGATTTTGACAGGCGGGAGGTCAACTTGATCCC
GGACGTATCACAGGCGCTGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MSEALSLFSLFASSFLSATLLPGNSEVVLVAMLLSGVSHPWVLVLTATMGNSLGGLTNVILGRFFPLRKTSRWQEKATGW
LKRYGAVTLLLSWMPVVGDLLCLLAGWMRISWGPVIFFLCLGKALRYVAVAAATVQGMIWWH

Sequences:

>Translated_142_residues
MSEALSLFSLFASSFLSATLLPGNSEVVLVAMLLSGVSHPWVLVLTATMGNSLGGLTNVILGRFFPLRKTSRWQEKATGW
LKRYGAVTLLLSWMPVVGDLLCLLAGWMRISWGPVIFFLCLGKALRYVAVAAATVQGMIWWH
>Mature_141_residues
SEALSLFSLFASSFLSATLLPGNSEVVLVAMLLSGVSHPWVLVLTATMGNSLGGLTNVILGRFFPLRKTSRWQEKATGWL
KRYGAVTLLLSWMPVVGDLLCLLAGWMRISWGPVIFFLCLGKALRYVAVAAATVQGMIWWH

Specific function: Unknown

COG id: COG1238

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0489 [H]

Homologues:

Organism=Escherichia coli, GI1789045, Length=142, Percent_Identity=98.5915492957747, Blast_Score=277, Evalue=2e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 15558; Mature: 15427

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEALSLFSLFASSFLSATLLPGNSEVVLVAMLLSGVSHPWVLVLTATMGNSLGGLTNVI
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEHHHCCCCHHHHHHH
LGRFFPLRKTSRWQEKATGWLKRYGAVTLLLSWMPVVGDLLCLLAGWMRISWGPVIFFLC
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGKALRYVAVAAATVQGMIWWH
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SEALSLFSLFASSFLSATLLPGNSEVVLVAMLLSGVSHPWVLVLTATMGNSLGGLTNVI
CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCEEEEEHHHCCCCHHHHHHH
LGRFFPLRKTSRWQEKATGWLKRYGAVTLLLSWMPVVGDLLCLLAGWMRISWGPVIFFLC
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGKALRYVAVAAATVQGMIWWH
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]