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The map label for this gene is caiF [H]

Identifier: 218547481

GI number: 218547481

Start: 43527

End: 43922

Strand: Direct

Name: caiF [H]

Synonym: EFER_0042

Alternate gene names: 218547481

Gene position: 43527-43922 (Clockwise)

Preceding gene: 218547480

Following gene: 218547488

Centisome position: 0.95

GC content: 45.45

Gene sequence:

>396_bases
ATGTGTGAAGGATATGTTGAAAAACCACTCTACTTGTTAATTGCCGAATGGATGATGGCAGAAAACAGATGGATTATTGC
AAGAGAGATCTCTATTCATTTTGATATTGAACACAGCAAGGCAATAAATACCCTGTCTTATATTTTGGGTGAAGTTGCTG
AAATTAGCTGTGAAGTGAAAATGATCCCCAATAAGCTGGAGGGGCGAGGGTGCCAGTGTCAGCGCCTGGTAAAAGTGGTT
GATATCGATGAGCAAATTTACGCCCGCCTGCGACATAACAGCCGGGAAAAAGTCGTCGGTGTCAGAAAGACGCCGCGTAT
TCCGGCGGTTCCCCTCGCTGAACTTAACCGTGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGCCGTTAA

Upstream 100 bases:

>100_bases
TAAGTCGCATACTATCAATATATCCACAATTTTAATATGGTCTTGATTAATATATAGACAAGCCATGACAAGATTTCTAA
TTAGTGCAACTGGAGTTCCT

Downstream 100 bases:

>100_bases
TTTTGTCTCGTTGATACCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGTAACCAGGTCGCATCCGG
CAAGATCACCGTTTTGGCGC

Product: DNA-binding transcriptional activator CaiF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MCEGYVEKPLYLLIAEWMMAENRWIIAREISIHFDIEHSKAINTLSYILGEVAEISCEVKMIPNKLEGRGCQCQRLVKVV
DIDEQIYARLRHNSREKVVGVRKTPRIPAVPLAELNREQKWQMMLSKSMRR

Sequences:

>Translated_131_residues
MCEGYVEKPLYLLIAEWMMAENRWIIAREISIHFDIEHSKAINTLSYILGEVAEISCEVKMIPNKLEGRGCQCQRLVKVV
DIDEQIYARLRHNSREKVVGVRKTPRIPAVPLAELNREQKWQMMLSKSMRR
>Mature_131_residues
MCEGYVEKPLYLLIAEWMMAENRWIIAREISIHFDIEHSKAINTLSYILGEVAEISCEVKMIPNKLEGRGCQCQRLVKVV
DIDEQIYARLRHNSREKVVGVRKTPRIPAVPLAELNREQKWQMMLSKSMRR

Specific function: Potential transcriptional activator of carnitine metabolism [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081680, Length=131, Percent_Identity=93.8931297709924, Blast_Score=258, Evalue=6e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020357
- ProDom:   PD081346 [H]

Pfam domain/function: PF07180 DUF1401 [H]

EC number: NA

Molecular weight: Translated: 15369; Mature: 15369

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
8.4 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
8.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCEGYVEKPLYLLIAEWMMAENRWIIAREISIHFDIEHSKAINTLSYILGEVAEISCEVK
CCCCCHHCCHHHHHHHHHHHCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHEEEEE
MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRHNSREKVVGVRKTPRIPAVPLAELNREQK
ECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCHHEEECCCCCCCCCCCHHHCCHHHH
WQMMLSKSMRR
HHHHHHHHHCC
>Mature Secondary Structure
MCEGYVEKPLYLLIAEWMMAENRWIIAREISIHFDIEHSKAINTLSYILGEVAEISCEVK
CCCCCHHCCHHHHHHHHHHHCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHEEEEE
MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRHNSREKVVGVRKTPRIPAVPLAELNREQK
ECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCHHEEECCCCCCCCCCCHHHCCHHHH
WQMMLSKSMRR
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8631699; 9278503 [H]