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The map label for this gene is yabJ [H]

Identifier: 218235931

GI number: 218235931

Start: 49891

End: 50265

Strand: Direct

Name: yabJ [H]

Synonym: BCB4264_A0052

Alternate gene names: 218235931

Gene position: 49891-50265 (Clockwise)

Preceding gene: 218234299

Following gene: 218235644

Centisome position: 0.92

GC content: 36.53

Gene sequence:

>375_bases
ATGAAAGTTGTTCAAACAAGCAAGGCACCACAAGCAATTGGACCTTATTCACAGGGGATTATTGTAAATAACATGTTCTA
TAGCTCAGGACAAATTCCATTGACGGCAAATGGGGAGCTTGTAACAGGAGATGTAACAGTACAAACAGAACAAGTATTTC
AAAATTTACAAGCGGTATTAGAGGAAGCAGGTGCTTCATTTGATACAGTCGTAAAAACAACAGTATTTTTAAAGGACATG
GATGATTTTAATGCTGTGAATGAAGTGTATAGCTCTTATTTCTCTACTCATAAACCAGCTCGATCTTGTGTGCAAGTAGC
AAAATTACCGAAAGATGTTTCCGTTGAAATTGAGGTAATTGCCCTAGTTAAGTAA

Upstream 100 bases:

>100_bases
ATCTTTTTTTATTTTATTTATAGATTATAAAATAGGTGGACAAACTGCCTTTCGTACACTATTTTTAAAGAGTAAAATAA
ATAATAAAAGGGTGAAAAGT

Downstream 100 bases:

>100_bases
CCTTTTGTAAGCGATAACCTCCGCTAATCTCTATATTCAACTACATTAAAAATTTTTATCTTAAAAATTTTTAAAAAATT
AAAGGGAAAATAGAAAATTT

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MKVVQTSKAPQAIGPYSQGIIVNNMFYSSGQIPLTANGELVTGDVTVQTEQVFQNLQAVLEEAGASFDTVVKTTVFLKDM
DDFNAVNEVYSSYFSTHKPARSCVQVAKLPKDVSVEIEVIALVK

Sequences:

>Translated_124_residues
MKVVQTSKAPQAIGPYSQGIIVNNMFYSSGQIPLTANGELVTGDVTVQTEQVFQNLQAVLEEAGASFDTVVKTTVFLKDM
DDFNAVNEVYSSYFSTHKPARSCVQVAKLPKDVSVEIEVIALVK
>Mature_124_residues
MKVVQTSKAPQAIGPYSQGIIVNNMFYSSGQIPLTANGELVTGDVTVQTEQVFQNLQAVLEEAGASFDTVVKTTVFLKDM
DDFNAVNEVYSSYFSTHKPARSCVQVAKLPKDVSVEIEVIALVK

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=122, Percent_Identity=48.3606557377049, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI87082396, Length=126, Percent_Identity=48.4126984126984, Blast_Score=128, Evalue=1e-31,
Organism=Escherichia coli, GI87082213, Length=124, Percent_Identity=45.1612903225806, Blast_Score=122, Evalue=9e-30,
Organism=Escherichia coli, GI1787245, Length=118, Percent_Identity=33.0508474576271, Blast_Score=74, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI71982075, Length=122, Percent_Identity=48.3606557377049, Blast_Score=110, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71982068, Length=122, Percent_Identity=48.3606557377049, Blast_Score=110, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI25148896, Length=122, Percent_Identity=48.3606557377049, Blast_Score=110, Evalue=2e-25,
Organism=Saccharomyces cerevisiae, GI6322138, Length=121, Percent_Identity=50.4132231404959, Blast_Score=126, Evalue=1e-30,
Organism=Saccharomyces cerevisiae, GI6320899, Length=100, Percent_Identity=52, Blast_Score=112, Evalue=2e-26,
Organism=Drosophila melanogaster, GI19921376, Length=122, Percent_Identity=47.5409836065574, Blast_Score=115, Evalue=7e-27,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13475; Mature: 13475

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVVQTSKAPQAIGPYSQGIIVNNMFYSSGQIPLTANGELVTGDVTVQTEQVFQNLQAVL
CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEECCCEEEECCEEEEHHHHHHHHHHHH
EEAGASFDTVVKTTVFLKDMDDFNAVNEVYSSYFSTHKPARSCVQVAKLPKDVSVEIEVI
HHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEE
ALVK
EEEC
>Mature Secondary Structure
MKVVQTSKAPQAIGPYSQGIIVNNMFYSSGQIPLTANGELVTGDVTVQTEQVFQNLQAVL
CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEECCCEEEECCEEEEHHHHHHHHHHHH
EEAGASFDTVVKTTVFLKDMDDFNAVNEVYSSYFSTHKPARSCVQVAKLPKDVSVEIEVI
HHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEE
ALVK
EEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 10368157; 14594850; 10557275 [H]