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The map label for this gene is yabM [H]

Identifier: 218235921

GI number: 218235921

Start: 58843

End: 60444

Strand: Direct

Name: yabM [H]

Synonym: BCB4264_A0060

Alternate gene names: 218235921

Gene position: 58843-60444 (Clockwise)

Preceding gene: 218231084

Following gene: 218235337

Centisome position: 1.09

GC content: 34.58

Gene sequence:

>1602_bases
ATGGAAGCGAAGAAGTATCAAGCCTTTTGGCGTGGGGCTATTATATTAACGATTGCAAGTTTTGTTACAAAAGTATTAAG
CGCTTTTTACCGTATTCCATATCAAAATATAGCGGGGGATATTGGGTTTTATATTTACCAACAAATTTACCCGTTTTATG
GATTTTGTTTAATTTTAGCTACTTATGGATTTCCTGTTATCATTTCGAAAATGGTTGCAGAACGACTAGAGCGGGGAAAA
CAAAAAGAAGCAGAAGAAATTATTTGTGTATCTTTTTGGTTCTTATTAGGAATTGGTTTTATAGGCTTCTTTACATTGTT
TTTTGGGGCCGAAACAATTGCGGCAGCTATGGGCGATATACACTTAGATAAGTTACTACGTGTTATTTCATTTTCATTCT
TATTGATGCCATTTTTGTCTGTAGCAAGAGGGTATTTTCAAGGATTTAATAATATGATGCCAACGGCTGTTTCGCAAGTA
ATAGAACAAACAATTCGAGTTTCTATTATTGTATTTTTATCGCTATTCCTAATTGCTCACGGATTTGATTTATATACAGT
TGGTGCAGGGGCTATGTTAGGCTCAATTGCGGGTGGACTTATTGGGATTATTGTACTTATATTGTATATGCGTCAAGATT
TTCGTTCTATATTCTTCAAAAGTACAGCGAGAATTAAGGGTAAAAGGAAGATAGTTAAAATCCTTTTTTGGCAGGGGTTA
GCGATTTGTGTTAGTAATTTAGTGCTTATTTTTATACAGATGGCTGATTCAGTGTCCTTTTACAGCTTACTTATTGGTGC
GGGAGAACAGGCTGAAAATGCAAAGGTATTAAAGGGTGTTTATGATAGAAGTATTCCGCTAATGCAATTAGGTACTGTTG
TGACGACTTCTTTCTCGTTGTCACTTATTCCGATTATTACAGCGGCGAAGGAAAGAGGAGATCTTTCCTTTATTCAAGAA
AAGGTAAAGTTAGCAATGAAAATAACATTTGTTATTGGACTTGCAGCAGCTATTGGACTAACTTGTATTATTCAACCTAC
CAATATTATGTTGTTTGAAAACAGTGATGGATCAGATGTTTTATCTATTTTATCGTTATCTATTTTATTTAGTTCATTGT
CAATTACGACAGCTTCTATTTTACAAGGATTAGGGCAAACGTTTAAGCCAGCATTATTTGTTGTATTTGGAGGTTGCTTA
AAGTTAGCGTTAAATTATATATTCATGCCTTATTTTGGTGTGAAAGGCGCAGCTTTTGCGACTTTATGTGCGTTAATTAT
AATCTCTGGATTAAATAGTTTGTTGCTTACGAGAGCTGTATCAGGATCACTTATCAATAAGCGAAATATGTTAGGGATAG
TAATTAGTGGTATTTGTATGGGGTTTGTATTAATGGTGTTCACACGTGTGTTACAGATGTCTGGATTAGTAATTAATACG
GAACATAGAGGAAGCGCGACGCTTGAAGCGTTGTTAGGTGTAGCCATCGGCGGATTGACATATATGTTTTTTATTTTGAA
ATTACGTGTATTTACAAAAAAAGAATTAGGAACCGTTATGAAACAAGAGAAAAAAGAAGGTTCATTGAAGAAGAGTGGAT
AG

Upstream 100 bases:

>100_bases
AACGTGTAGGAACTCATTATTACCCGTGTTGGTAAGGGAGTTTGTTCTTTTCTTTATGATATAATACGAGAGGTGAGAAT
AGAAAAAGGAGTTTTCTTGT

Downstream 100 bases:

>100_bases
AGGTGACTGGTTGTGAGTGGAATCATTACTATTTTAGGTTTAGGAGCTGGTGAATTAGATCAGCTAACGATGGGTGTATA
TCGAAAAATAAAAGAAGCAG

Product: polysaccharide synthase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 533; Mature: 533

Protein sequence:

>533_residues
MEAKKYQAFWRGAIILTIASFVTKVLSAFYRIPYQNIAGDIGFYIYQQIYPFYGFCLILATYGFPVIISKMVAERLERGK
QKEAEEIICVSFWFLLGIGFIGFFTLFFGAETIAAAMGDIHLDKLLRVISFSFLLMPFLSVARGYFQGFNNMMPTAVSQV
IEQTIRVSIIVFLSLFLIAHGFDLYTVGAGAMLGSIAGGLIGIIVLILYMRQDFRSIFFKSTARIKGKRKIVKILFWQGL
AICVSNLVLIFIQMADSVSFYSLLIGAGEQAENAKVLKGVYDRSIPLMQLGTVVTTSFSLSLIPIITAAKERGDLSFIQE
KVKLAMKITFVIGLAAAIGLTCIIQPTNIMLFENSDGSDVLSILSLSILFSSLSITTASILQGLGQTFKPALFVVFGGCL
KLALNYIFMPYFGVKGAAFATLCALIIISGLNSLLLTRAVSGSLINKRNMLGIVISGICMGFVLMVFTRVLQMSGLVINT
EHRGSATLEALLGVAIGGLTYMFFILKLRVFTKKELGTVMKQEKKEGSLKKSG

Sequences:

>Translated_533_residues
MEAKKYQAFWRGAIILTIASFVTKVLSAFYRIPYQNIAGDIGFYIYQQIYPFYGFCLILATYGFPVIISKMVAERLERGK
QKEAEEIICVSFWFLLGIGFIGFFTLFFGAETIAAAMGDIHLDKLLRVISFSFLLMPFLSVARGYFQGFNNMMPTAVSQV
IEQTIRVSIIVFLSLFLIAHGFDLYTVGAGAMLGSIAGGLIGIIVLILYMRQDFRSIFFKSTARIKGKRKIVKILFWQGL
AICVSNLVLIFIQMADSVSFYSLLIGAGEQAENAKVLKGVYDRSIPLMQLGTVVTTSFSLSLIPIITAAKERGDLSFIQE
KVKLAMKITFVIGLAAAIGLTCIIQPTNIMLFENSDGSDVLSILSLSILFSSLSITTASILQGLGQTFKPALFVVFGGCL
KLALNYIFMPYFGVKGAAFATLCALIIISGLNSLLLTRAVSGSLINKRNMLGIVISGICMGFVLMVFTRVLQMSGLVINT
EHRGSATLEALLGVAIGGLTYMFFILKLRVFTKKELGTVMKQEKKEGSLKKSG
>Mature_533_residues
MEAKKYQAFWRGAIILTIASFVTKVLSAFYRIPYQNIAGDIGFYIYQQIYPFYGFCLILATYGFPVIISKMVAERLERGK
QKEAEEIICVSFWFLLGIGFIGFFTLFFGAETIAAAMGDIHLDKLLRVISFSFLLMPFLSVARGYFQGFNNMMPTAVSQV
IEQTIRVSIIVFLSLFLIAHGFDLYTVGAGAMLGSIAGGLIGIIVLILYMRQDFRSIFFKSTARIKGKRKIVKILFWQGL
AICVSNLVLIFIQMADSVSFYSLLIGAGEQAENAKVLKGVYDRSIPLMQLGTVVTTSFSLSLIPIITAAKERGDLSFIQE
KVKLAMKITFVIGLAAAIGLTCIIQPTNIMLFENSDGSDVLSILSLSILFSSLSITTASILQGLGQTFKPALFVVFGGCL
KLALNYIFMPYFGVKGAAFATLCALIIISGLNSLLLTRAVSGSLINKRNMLGIVISGICMGFVLMVFTRVLQMSGLVINT
EHRGSATLEALLGVAIGGLTYMFFILKLRVFTKKELGTVMKQEKKEGSLKKSG

Specific function: Unknown

COG id: COG2244

COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002797 [H]

Pfam domain/function: PF01943 Polysacc_synt [H]

EC number: NA

Molecular weight: Translated: 58470; Mature: 58470

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure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CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]