Click here to switch to the map view.

The map label for this gene is rbfA [H]

Identifier: 218235779

GI number: 218235779

Start: 3828865

End: 3829221

Strand: Reverse

Name: rbfA [H]

Synonym: BCB4264_A3909

Alternate gene names: 218235779

Gene position: 3829221-3828865 (Counterclockwise)

Preceding gene: 218232914

Following gene: 218235132

Centisome position: 70.66

GC content: 35.01

Gene sequence:

>357_bases
ATGAAATTACGTGCGAACCGTGTGGGCGAGCAAATGAAAAAAGAATTAGGCGATATTATCAGTCGTAAAATTAAAGACCC
ACGTATTGGATTTGTTACAGTAACAGATGTACAAGTGAGTGGTGATTTACAAATTGCTAAAGTATATATTTCCGTTTTAG
GTGACGAAGAACAGAAAGAAAATACTTTAAAAGGTTTAGCGAAGGCAAAAGGCTTTATTCGTTCAGAAATTGGCCAACGT
ATTCGTCTTCGTAAAACACCGGAAATTACCTTTGAGTTTGATGAGTCTATCGGATATGGTCATCGAATTGATACACTTTT
ACATGAAATTAATAAAGACGGTAAACGTGAAGAATAA

Upstream 100 bases:

>100_bases
TGAAAAAGAAATGAATCGTGTACTTGAGTACATCGATTCATTTCCTGAAATTGAACGTACAATAACACATTTGGAATGGT
ATTGAATGAGGTGAAGAGTT

Downstream 100 bases:

>100_bases
TGGATAGACATTTGTCTATCCATTTTTTCAATGCAAAATAAGTTTTGGATATTTAATACGAAAGAATTATGATGAGGTGA
ACATATATGGAAGGTGTAGT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MKLRANRVGEQMKKELGDIISRKIKDPRIGFVTVTDVQVSGDLQIAKVYISVLGDEEQKENTLKGLAKAKGFIRSEIGQR
IRLRKTPEITFEFDESIGYGHRIDTLLHEINKDGKREE

Sequences:

>Translated_118_residues
MKLRANRVGEQMKKELGDIISRKIKDPRIGFVTVTDVQVSGDLQIAKVYISVLGDEEQKENTLKGLAKAKGFIRSEIGQR
IRLRKTPEITFEFDESIGYGHRIDTLLHEINKDGKREE
>Mature_118_residues
MKLRANRVGEQMKKELGDIISRKIKDPRIGFVTVTDVQVSGDLQIAKVYISVLGDEEQKENTLKGLAKAKGFIRSEIGQR
IRLRKTPEITFEFDESIGYGHRIDTLLHEINKDGKREE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=112, Percent_Identity=43.75, Blast_Score=93, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13483; Mature: 13483

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRANRVGEQMKKELGDIISRKIKDPRIGFVTVTDVQVSGDLQIAKVYISVLGDEEQKE
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHCCCHHHH
NTLKGLAKAKGFIRSEIGQRIRLRKTPEITFEFDESIGYGHRIDTLLHEINKDGKREE
HHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKLRANRVGEQMKKELGDIISRKIKDPRIGFVTVTDVQVSGDLQIAKVYISVLGDEEQKE
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCHHHHHHHHHHHCCCHHHH
NTLKGLAKAKGFIRSEIGQRIRLRKTPEITFEFDESIGYGHRIDTLLHEINKDGKREE
HHHHHHHHHHHHHHHHHHHHEECCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA