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The map label for this gene is ydcI [H]

Identifier: 218235768

GI number: 218235768

Start: 240401

End: 242569

Strand: Direct

Name: ydcI [H]

Synonym: BCB4264_A0270

Alternate gene names: 218235768

Gene position: 240401-242569 (Clockwise)

Preceding gene: 218234799

Following gene: 218235774

Centisome position: 4.44

GC content: 35.96

Gene sequence:

>2169_bases
ATGGAAATGGTAGATAATCGACAAGCGTTAATGAAAATGTTAGTGAAAGAATTAGGCTTTACCGAAAAGCAAGTTCGTCA
TGTTATTCAATTAACAGAAGAAGGTAACACAGTTCCATTTATTGCTCGTTACCGAAAAGAATGGACAGGCTCTTTAGATG
AGGTGCAAATTCGTACGATTTTAGAGAGATGGCAATATATGATGCAACTTGAAGATAGGAAGGAAGAAGTTCTTCGTCTT
ATTGATGAGAAGGGGAAACTGACAGAAGAGCTACGACAGCAAATTGTTAAAGCTACAAAGTTGCAAGAAGTAGAAGATCT
ATATCGTCCATATAAAGAGAAAAGAAGAACGAAAGCGACAATTGCTAAAGAAAAAGGATTAGAACCATTAGCTGAATGGT
TATTGTTATATAAGAAAGAAGATCCGGCTAAAAAGGCAGTGGAATTTATTAATGTAGAGAAAGAAGTGCAATCTGCAGAA
GAAGCTTTACAAGGTGCACAAGACATTATTGCAGAAATGGTTTCAGATGAAGCTGCGTATCGTAGTTGGATTCGAAATGT
TACTTTTAGAAAAGGTGTTATGTCTTCGTCCGTGAAAGATGAAGAAAAAGATGAAAAGAATATATATGAAATGTATTACA
GTTATGAAGAACCATTGCAAAAAGTAGTACCACATCGTGTATTAGCAATGAATCGTGGCGAGAAAGAAGATATATTGAGA
GTTGCTGTTGTTCCGCCAGTAGATGAGATAGTAACTTTCTTAAATAAGAAAGTAATTCGTGATAACGATTCGAAAAGTGC
ACATTATGTACAATTAGCGATTGAAGATGGTTATAAACGATTAATTCAATCTTCAATCGAAAGAGAGATTCGTAAAGAAT
TAACAGAAACAGCTGAAGAACAAGCAATACATATTTTCTCTGAGAACTTACGTAACTTATTATTACAACCTCCGATGAAA
GGGAAAGTCGTGCTAGCGGTAGATCCGGCATATAGAACTGGTTGTAAATTGTCTGTAGTAGATGATACGGGGAAAGTACT
ACATATCGATGTTATTTATCCGCATCCACCTGTTCGTAAATATGATGATGCAAAAACGAAAGTTCTTTCTATTATAGATA
AATATCAAGTTGAAATGATTGCAATTGGTAATGGGACAGCATCTAGAGAAACAGAAGAGTTTATAGTAGATGTATTACAA
AGTGTGAACCGAGATGTCTTTTATATTATTGTAAATGAAGCGGGTGCTAGTGTATATTCAGCTTCTGATTTAGCCCGTGA
GGAATTCCCAAATTTACAAGTTGAAGAGAGAAGTGCCGTTTCTATTGGGAGACGTCTGCAAGATCCACTTGCTGAACTTG
TGAAAATTGATCCTAAATCAGTTGGGGTTGGACAATACCAACATGATGTATCTCAAAAGAGACTGAATGAATCATTAACA
TTTGTAGTAGAAACAGCTGTTAACCAAGTTGGGGTTAATGTAAATACGGCTTCGGTTGCATTGTTACAATATGTTTCAGG
TTTATCGAAAACTGTTGCGAAAAATATTGTGGCAAAGAGAGAAGAAGATGGGAAATTCACGAAGCGCACGGAATTAAAGA
AAATCCCACGTTTAGGTGCAAAGACGTATGAACAATGTATAGGTTTCTTACGTATACTAGAAGGAGCGAATCCATTAGAT
CGAACAGGTATTCATCCAGAGCAATATAAAAATGTTGAATTATTATTGAAGAGTCTAGGGTTATCGATAGATGACGTAGG
ACAACCGCAATTACAAAAGAGATTGGAAGAAGTAGAGGTTTCTAAGTTATCTCAAGAAACAGGAGTTGGGGAGCCGACGT
TAGTTGATATTATAGATGCGCTTATTAGTCCAGAACGCGATATGAGGGATGAGTTGCCTAAACCACTTCTGAAAAAAGGG
ATTTTGAAATTAGAAGATTTAAAACGTGGTATGGAATTAGAAGGAACAGTTCGTAACGTTGTTGATTTTGGTGCTTTTGT
TGATGTTGGCGTAAAGCAAGATGGTTTAGTACATATTTCTAAACTTAGCAAACAGTTTGTAAAGCATCCGTTAGATGTTG
TATCAGTAGGGCAAATTGTAAAAGTATGGGTAGATGATATTGATACAAAAAAAGGACGCGTTGCACTATCTATGTTGCCG
ATTGAATAG

Upstream 100 bases:

>100_bases
TTACAAATTAGTTTAGGACTAATAGATTTTTAAATCGGCAGTTTAAGTTGCTCTCTTTGAAGGGCAACTTTTTTTATTAT
AGAGGAGGTTACGGTTGTAT

Downstream 100 bases:

>100_bases
TAAGAGAAGAGAGCAGATGAAACTGCTCTTTTTTTATGGAATAAAAAGTGTAATGGATTATGAGCTTTGATGTATTTTGC
TATAATAAAACCAGCATTCA

Product: S1 RNA binding domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 722; Mature: 722

Protein sequence:

>722_residues
MEMVDNRQALMKMLVKELGFTEKQVRHVIQLTEEGNTVPFIARYRKEWTGSLDEVQIRTILERWQYMMQLEDRKEEVLRL
IDEKGKLTEELRQQIVKATKLQEVEDLYRPYKEKRRTKATIAKEKGLEPLAEWLLLYKKEDPAKKAVEFINVEKEVQSAE
EALQGAQDIIAEMVSDEAAYRSWIRNVTFRKGVMSSSVKDEEKDEKNIYEMYYSYEEPLQKVVPHRVLAMNRGEKEDILR
VAVVPPVDEIVTFLNKKVIRDNDSKSAHYVQLAIEDGYKRLIQSSIEREIRKELTETAEEQAIHIFSENLRNLLLQPPMK
GKVVLAVDPAYRTGCKLSVVDDTGKVLHIDVIYPHPPVRKYDDAKTKVLSIIDKYQVEMIAIGNGTASRETEEFIVDVLQ
SVNRDVFYIIVNEAGASVYSASDLAREEFPNLQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVSQKRLNESLT
FVVETAVNQVGVNVNTASVALLQYVSGLSKTVAKNIVAKREEDGKFTKRTELKKIPRLGAKTYEQCIGFLRILEGANPLD
RTGIHPEQYKNVELLLKSLGLSIDDVGQPQLQKRLEEVEVSKLSQETGVGEPTLVDIIDALISPERDMRDELPKPLLKKG
ILKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSMLP
IE

Sequences:

>Translated_722_residues
MEMVDNRQALMKMLVKELGFTEKQVRHVIQLTEEGNTVPFIARYRKEWTGSLDEVQIRTILERWQYMMQLEDRKEEVLRL
IDEKGKLTEELRQQIVKATKLQEVEDLYRPYKEKRRTKATIAKEKGLEPLAEWLLLYKKEDPAKKAVEFINVEKEVQSAE
EALQGAQDIIAEMVSDEAAYRSWIRNVTFRKGVMSSSVKDEEKDEKNIYEMYYSYEEPLQKVVPHRVLAMNRGEKEDILR
VAVVPPVDEIVTFLNKKVIRDNDSKSAHYVQLAIEDGYKRLIQSSIEREIRKELTETAEEQAIHIFSENLRNLLLQPPMK
GKVVLAVDPAYRTGCKLSVVDDTGKVLHIDVIYPHPPVRKYDDAKTKVLSIIDKYQVEMIAIGNGTASRETEEFIVDVLQ
SVNRDVFYIIVNEAGASVYSASDLAREEFPNLQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVSQKRLNESLT
FVVETAVNQVGVNVNTASVALLQYVSGLSKTVAKNIVAKREEDGKFTKRTELKKIPRLGAKTYEQCIGFLRILEGANPLD
RTGIHPEQYKNVELLLKSLGLSIDDVGQPQLQKRLEEVEVSKLSQETGVGEPTLVDIIDALISPERDMRDELPKPLLKKG
ILKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSMLP
IE
>Mature_722_residues
MEMVDNRQALMKMLVKELGFTEKQVRHVIQLTEEGNTVPFIARYRKEWTGSLDEVQIRTILERWQYMMQLEDRKEEVLRL
IDEKGKLTEELRQQIVKATKLQEVEDLYRPYKEKRRTKATIAKEKGLEPLAEWLLLYKKEDPAKKAVEFINVEKEVQSAE
EALQGAQDIIAEMVSDEAAYRSWIRNVTFRKGVMSSSVKDEEKDEKNIYEMYYSYEEPLQKVVPHRVLAMNRGEKEDILR
VAVVPPVDEIVTFLNKKVIRDNDSKSAHYVQLAIEDGYKRLIQSSIEREIRKELTETAEEQAIHIFSENLRNLLLQPPMK
GKVVLAVDPAYRTGCKLSVVDDTGKVLHIDVIYPHPPVRKYDDAKTKVLSIIDKYQVEMIAIGNGTASRETEEFIVDVLQ
SVNRDVFYIIVNEAGASVYSASDLAREEFPNLQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVSQKRLNESLT
FVVETAVNQVGVNVNTASVALLQYVSGLSKTVAKNIVAKREEDGKFTKRTELKKIPRLGAKTYEQCIGFLRILEGANPLD
RTGIHPEQYKNVELLLKSLGLSIDDVGQPQLQKRLEEVEVSKLSQETGVGEPTLVDIIDALISPERDMRDELPKPLLKKG
ILKLEDLKRGMELEGTVRNVVDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSMLP
IE

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=769, Percent_Identity=34.4603381014304, Blast_Score=413, Evalue=1e-115,
Organism=Homo sapiens, GI27597090, Length=556, Percent_Identity=23.021582733813, Blast_Score=74, Evalue=5e-13,
Organism=Escherichia coli, GI87082262, Length=721, Percent_Identity=43.5506241331484, Blast_Score=569, Evalue=1e-163,
Organism=Escherichia coli, GI1787140, Length=75, Percent_Identity=45.3333333333333, Blast_Score=69, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17511129, Length=759, Percent_Identity=31.7523056653491, Blast_Score=286, Evalue=2e-77,
Organism=Caenorhabditis elegans, GI17552892, Length=315, Percent_Identity=24.7619047619048, Blast_Score=75, Evalue=2e-13,
Organism=Drosophila melanogaster, GI62484314, Length=746, Percent_Identity=32.573726541555, Blast_Score=377, Evalue=1e-104,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 82170; Mature: 82170

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMVDNRQALMKMLVKELGFTEKQVRHVIQLTEEGNTVPFIARYRKEWTGSLDEVQIRTI
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH
LERWQYMMQLEDRKEEVLRLIDEKGKLTEELRQQIVKATKLQEVEDLYRPYKEKRRTKAT
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKEKGLEPLAEWLLLYKKEDPAKKAVEFINVEKEVQSAEEALQGAQDIIAEMVSDEAAY
HHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSWIRNVTFRKGVMSSSVKDEEKDEKNIYEMYYSYEEPLQKVVPHRVLAMNRGEKEDILR
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHEEE
VAVVPPVDEIVTFLNKKVIRDNDSKSAHYVQLAIEDGYKRLIQSSIEREIRKELTETAEE
EEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAIHIFSENLRNLLLQPPMKGKVVLAVDPAYRTGCKLSVVDDTGKVLHIDVIYPHPPVRK
HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEEECCCCCCCC
YDDAKTKVLSIIDKYQVEMIAIGNGTASRETEEFIVDVLQSVNRDVFYIIVNEAGASVYS
CCHHHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHH
ASDLAREEFPNLQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVSQKRLNESLT
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
FVVETAVNQVGVNVNTASVALLQYVSGLSKTVAKNIVAKREEDGKFTKRTELKKIPRLGA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCH
KTYEQCIGFLRILEGANPLDRTGIHPEQYKNVELLLKSLGLSIDDVGQPQLQKRLEEVEV
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
SKLSQETGVGEPTLVDIIDALISPERDMRDELPKPLLKKGILKLEDLKRGMELEGTVRNV
HHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
VDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSMLP
HHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
IE
CC
>Mature Secondary Structure
MEMVDNRQALMKMLVKELGFTEKQVRHVIQLTEEGNTVPFIARYRKEWTGSLDEVQIRTI
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHH
LERWQYMMQLEDRKEEVLRLIDEKGKLTEELRQQIVKATKLQEVEDLYRPYKEKRRTKAT
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKEKGLEPLAEWLLLYKKEDPAKKAVEFINVEKEVQSAEEALQGAQDIIAEMVSDEAAY
HHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSWIRNVTFRKGVMSSSVKDEEKDEKNIYEMYYSYEEPLQKVVPHRVLAMNRGEKEDILR
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHEEE
VAVVPPVDEIVTFLNKKVIRDNDSKSAHYVQLAIEDGYKRLIQSSIEREIRKELTETAEE
EEECCCHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
QAIHIFSENLRNLLLQPPMKGKVVLAVDPAYRTGCKLSVVDDTGKVLHIDVIYPHPPVRK
HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEEECCCCEEEEEEECCCCCCCC
YDDAKTKVLSIIDKYQVEMIAIGNGTASRETEEFIVDVLQSVNRDVFYIIVNEAGASVYS
CCHHHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHH
ASDLAREEFPNLQVEERSAVSIGRRLQDPLAELVKIDPKSVGVGQYQHDVSQKRLNESLT
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
FVVETAVNQVGVNVNTASVALLQYVSGLSKTVAKNIVAKREEDGKFTKRTELKKIPRLGA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCH
KTYEQCIGFLRILEGANPLDRTGIHPEQYKNVELLLKSLGLSIDDVGQPQLQKRLEEVEV
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
SKLSQETGVGEPTLVDIIDALISPERDMRDELPKPLLKKGILKLEDLKRGMELEGTVRNV
HHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHH
VDFGAFVDVGVKQDGLVHISKLSKQFVKHPLDVVSVGQIVKVWVDDIDTKKGRVALSMLP
HHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
IE
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]