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The map label for this gene is yjhR [C]

Identifier: 218235724

GI number: 218235724

Start: 3080663

End: 3082942

Strand: Reverse

Name: yjhR [C]

Synonym: BCB4264_A3199

Alternate gene names: 218235724

Gene position: 3082942-3080663 (Counterclockwise)

Preceding gene: 218232481

Following gene: 218230942

Centisome position: 56.89

GC content: 38.33

Gene sequence:

>2280_bases
ATGAATACACCTACTCAAACTCCTTCATTATCGGAAACGATGAAAGAGTGGCATTATGCATTAGCGTATGAAATTAAACA
TTGGAAAACGATAGGTGGTAGTAAAATTTCTATCATGAACGGTCGTTTTTTATATACAGATTATGAAAGTACAGTATACG
TATTTCAGCTTATTTCGGAAGTAAGCTTACCTGAAGGTTCACCGATTCGAATTGAGTTCGATGGTGAGGAAGCGACAGGG
GAAGTGTTATCTGTACATGGATTAGAAATAGAGCTGAAATTAAATGATTATATACAAGGTGAAATAAGAGAAGCGGTTTT
ATACAGTGAACCGTGGCAATTGTTAGAGCAACTGCAAGAGCGATTGAAAGAAGCACGTAAAGATAAGCTAAAACGTAATC
GTATAAAGCGTCTTGTTGATGGGACGAGCAGTCCGAAACATATTGAGAAGATGAAAAATCCGAAAAATGAACTGGCATAT
CGCGCGTTTTACAATCCGACAACGTACGTATGGGGACCACCTGGAACAGGGAAGTCTTACAATTTATCACGTATTATTTC
GGCTCATTATCAAAAAGAAAAATCGGTACTTGTGTTAGCTCATAGTAATGCGGCAGTAGACGTATTAATGAGTGAAGTAA
CGAAGCAAATTGAGAAGAAAAAGAAATGGACGCCTGGTGAAATTGTTCGTTACGGTTATAGTCAACATGAACATATACGA
AATCATGAAACGTTACTTGCGTCGAAGTTAGTTGAAACGACGAACGGATCTTGGGGTGAGGAAAGACTCTATTTAGAAGA
GACACGCCAAGAGCTTCGTGAAAAAATCTTATCGTATAAAGCAACATCTGCTGATAAGAAGCGTATGCAGGAGATTGAAA
GTGATCTTCGAAAGCAAAAGGCTAAAATTAAAGAAGTAGAAAAAGAATATATTGAAAATGCGAAAGTAATCGGCGCAACT
TTATCGAAATGTGCCATTGATTCACTTATTTATGAGCGTACATTTGATTTAGTTGTTGTAGATGAAGTAAGTATGGCATA
TGTTCCGCAAATTGCATTAGCTGCTTCACTTGGAAAACGTATCGTCGTTTGCGGTGACTTTTTACAGTTACCTCCAATTG
CGATGGCAAATCATGAACTCGTTCGCAAATGGCTTGGGGAAGATATGTTTTACCATGCTGGGATTGTTGAGTCTGTTAAT
AAATCAGAAGCACATCCGAACCTATTTATGTTGCAGGAACAAAGACGTATGCATGCAGATATATCGAAGTTTACGAATTC
GTTTATTTATAAAAATAGAGTATACGATCATCCGTCTGTTTCAGAGCGTAAAGAACTTGCGCAATTGCAGCCGTTCGCAA
ATGAAGCGAGTGTTTTATTTGATACGAGCCAAATGGGAGCTTTTTCGTTAAAAGATGCTGCTTCTGGTTCACGTTTTAAC
ATTATGTCTGGTTTAGTAGCAATGCAAATTATGTTAATCGGATTGTTAGACGGTGTGCAATCCATTGGTGTTGTGACGCC
TTACAGAGCGCAGTCACGCTTTTTATCGACGTGTATGAGAGAAATGTTGCAGAGAACGAAATATCAAAACATACCAGTTT
TAGCGGCGACAGTTCATAAGTTCCAAGGTTCTGAAAGAGATATGATGATTTTTGATACGGTTGACAGTTATCCGCAAGAA
CGACCTGGCGTATTATTCTTTGATCACAAAAACCATCGCCTCGTCAATGTAGCAGTGACAAGGGCGAGAGGGAAGTTCAT
TCAATTATCAGATTGCCATTATATGCGTAAAAACCTTTCGAGAAAACAAGCGTTATCACAATTAACAGCTCATATAGAAC
GTCACGGAAATGTGTATGATCGCACGACATCAAGACAATTGTGGGAACGAAAAATATCGAAACGTTTACGCTGGTTTATG
GAAATGAATCTTGAGGAAACGAAAGGGCTATTAAAAGATATTTTAGCAGCAAAACGAAAAATTATTATTTCACTTCCAAG
TACAAAACAAGTGGATAAGCGAGTATGGCAAGCGTTAATGCGTACAAATGCGCAAATAACAGTGTATAGTGACGGACCAG
TTCCACTGAAAAATGTAAAGTTACAAAGACAAAATAAAGCATTCCCGTTCCTAGTAATCGATGATGAAATCTTCTGGGCA
GGCGCACCGCTTACATCTCAAATGATGTTTGAAGGTAGTACGGAATTTCCGTACGTATGTGCAAGACTGCAAGCACCTGA
GACAATTGGTGTATTAAAAGGATTTTTAGATATTCGGTAA

Upstream 100 bases:

>100_bases
GAAAATTAAGAAAATAAGCAAGATAAAAACCTTACAAATTTTAGCGTGTTATATGGTATAGTGAGAAAGTATGTTTGGGG
AGAAGGAAGGAGATTATACG

Downstream 100 bases:

>100_bases
ATTCGGATAGGAATTCCTTGACTTTTACTTGGAATGAACTTAGAATAAAAAATAATTTAATATAATTTTATGAAAATTCT
TATCACGAGAGGTGGAGGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 759; Mature: 759

Protein sequence:

>759_residues
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYESTVYVFQLISEVSLPEGSPIRIEFDGEEATG
EVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQERLKEARKDKLKRNRIKRLVDGTSSPKHIEKMKNPKNELAY
RAFYNPTTYVWGPPGTGKSYNLSRIISAHYQKEKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRMQEIESDLRKQKAKIKEVEKEYIENAKVIGAT
LSKCAIDSLIYERTFDLVVVDEVSMAYVPQIALAASLGKRIVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVN
KSEAHPNLFMLQEQRRMHADISKFTNSFIYKNRVYDHPSVSERKELAQLQPFANEASVLFDTSQMGAFSLKDAASGSRFN
IMSGLVAMQIMLIGLLDGVQSIGVVTPYRAQSRFLSTCMREMLQRTKYQNIPVLAATVHKFQGSERDMMIFDTVDSYPQE
RPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLSRKQALSQLTAHIERHGNVYDRTTSRQLWERKISKRLRWFM
EMNLEETKGLLKDILAAKRKIIISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFLVIDDEIFWA
GAPLTSQMMFEGSTEFPYVCARLQAPETIGVLKGFLDIR

Sequences:

>Translated_759_residues
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYESTVYVFQLISEVSLPEGSPIRIEFDGEEATG
EVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQERLKEARKDKLKRNRIKRLVDGTSSPKHIEKMKNPKNELAY
RAFYNPTTYVWGPPGTGKSYNLSRIISAHYQKEKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRMQEIESDLRKQKAKIKEVEKEYIENAKVIGAT
LSKCAIDSLIYERTFDLVVVDEVSMAYVPQIALAASLGKRIVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVN
KSEAHPNLFMLQEQRRMHADISKFTNSFIYKNRVYDHPSVSERKELAQLQPFANEASVLFDTSQMGAFSLKDAASGSRFN
IMSGLVAMQIMLIGLLDGVQSIGVVTPYRAQSRFLSTCMREMLQRTKYQNIPVLAATVHKFQGSERDMMIFDTVDSYPQE
RPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLSRKQALSQLTAHIERHGNVYDRTTSRQLWERKISKRLRWFM
EMNLEETKGLLKDILAAKRKIIISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFLVIDDEIFWA
GAPLTSQMMFEGSTEFPYVCARLQAPETIGVLKGFLDIR
>Mature_759_residues
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYESTVYVFQLISEVSLPEGSPIRIEFDGEEATG
EVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQERLKEARKDKLKRNRIKRLVDGTSSPKHIEKMKNPKNELAY
RAFYNPTTYVWGPPGTGKSYNLSRIISAHYQKEKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRMQEIESDLRKQKAKIKEVEKEYIENAKVIGAT
LSKCAIDSLIYERTFDLVVVDEVSMAYVPQIALAASLGKRIVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVN
KSEAHPNLFMLQEQRRMHADISKFTNSFIYKNRVYDHPSVSERKELAQLQPFANEASVLFDTSQMGAFSLKDAASGSRFN
IMSGLVAMQIMLIGLLDGVQSIGVVTPYRAQSRFLSTCMREMLQRTKYQNIPVLAATVHKFQGSERDMMIFDTVDSYPQE
RPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLSRKQALSQLTAHIERHGNVYDRTTSRQLWERKISKRLRWFM
EMNLEETKGLLKDILAAKRKIIISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFLVIDDEIFWA
GAPLTSQMMFEGSTEFPYVCARLQAPETIGVLKGFLDIR

Specific function: Unknown

COG id: COG1112

COG function: function code L; Superfamily I DNA and RNA helicases and helicase subunits

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DNA2/NAM7 helicase family [H]

Homologues:

Organism=Homo sapiens, GI119392094, Length=474, Percent_Identity=26.3713080168776, Blast_Score=95, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI71981659, Length=467, Percent_Identity=25.2676659528908, Blast_Score=99, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17533987, Length=353, Percent_Identity=23.7960339943343, Blast_Score=69, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17533985, Length=353, Percent_Identity=23.7960339943343, Blast_Score=68, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322835, Length=495, Percent_Identity=25.4545454545455, Blast_Score=94, Evalue=5e-20,
Organism=Saccharomyces cerevisiae, GI6323726, Length=467, Percent_Identity=24.8394004282655, Blast_Score=90, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6323462, Length=492, Percent_Identity=23.1707317073171, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI18859757, Length=454, Percent_Identity=27.5330396475771, Blast_Score=111, Evalue=2e-24,
Organism=Drosophila melanogaster, GI221330969, Length=455, Percent_Identity=22.8571428571429, Blast_Score=80, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24660647, Length=455, Percent_Identity=22.8571428571429, Blast_Score=80, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR004483 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 87288; Mature: 87288

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYESTVYVFQLISE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCEEEEECCCHHHHHHHHHHH
VSLPEGSPIRIEFDGEEATGEVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQE
HCCCCCCEEEEEECCCCCCCCEEEEECEEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHH
RLKEARKDKLKRNRIKRLVDGTSSPKHIEKMKNPKNELAYRAFYNPTTYVWGPPGTGKSY
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHEEEEECCCCEEEECCCCCCCCC
NLSRIISAHYQKEKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
CHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHH
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRMQEIESDLRKQK
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AKIKEVEKEYIENAKVIGATLSKCAIDSLIYERTFDLVVVDEVSMAYVPQIALAASLGKR
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHCCCE
IVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVNKSEAHPNLFMLQEQRRMHAD
EEEECCHHHCCCCHHCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHH
ISKFTNSFIYKNRVYDHPSVSERKELAQLQPFANEASVLFDTSQMGAFSLKDAASGSRFN
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEHHCCCCCCHH
IMSGLVAMQIMLIGLLDGVQSIGVVTPYRAQSRFLSTCMREMLQRTKYQNIPVLAATVHK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
FQGSERDMMIFDTVDSYPQERPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLS
HCCCCCCEEEEECHHCCCCCCCCEEEEECCCCEEEEEEEEECCCCEEEECCHHHHHHCCH
RKQALSQLTAHIERHGNVYDRTTSRQLWERKISKRLRWFMEMNLEETKGLLKDILAAKRK
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCE
IIISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFLVIDDEIFWA
EEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHCCEEECCCCCCCEEEECCCEEEC
GAPLTSQMMFEGSTEFPYVCARLQAPETIGVLKGFLDIR
CCCHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYESTVYVFQLISE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCEEEEECCCHHHHHHHHHHH
VSLPEGSPIRIEFDGEEATGEVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQE
HCCCCCCEEEEEECCCCCCCCEEEEECEEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHH
RLKEARKDKLKRNRIKRLVDGTSSPKHIEKMKNPKNELAYRAFYNPTTYVWGPPGTGKSY
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHEEEEECCCCEEEECCCCCCCCC
NLSRIISAHYQKEKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
CHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHH
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRMQEIESDLRKQK
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AKIKEVEKEYIENAKVIGATLSKCAIDSLIYERTFDLVVVDEVSMAYVPQIALAASLGKR
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHCCCE
IVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVNKSEAHPNLFMLQEQRRMHAD
EEEECCHHHCCCCHHCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHH
ISKFTNSFIYKNRVYDHPSVSERKELAQLQPFANEASVLFDTSQMGAFSLKDAASGSRFN
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEHHCCCCCCHH
IMSGLVAMQIMLIGLLDGVQSIGVVTPYRAQSRFLSTCMREMLQRTKYQNIPVLAATVHK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
FQGSERDMMIFDTVDSYPQERPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLS
HCCCCCCEEEEECHHCCCCCCCCEEEEECCCCEEEEEEEEECCCCEEEECCHHHHHHCCH
RKQALSQLTAHIERHGNVYDRTTSRQLWERKISKRLRWFMEMNLEETKGLLKDILAAKRK
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCE
IIISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFLVIDDEIFWA
EEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHCCEEECCCCCCCEEEECCCEEEC
GAPLTSQMMFEGSTEFPYVCARLQAPETIGVLKGFLDIR
CCCHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]