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The map label for this gene is ylmH [H]

Identifier: 218235237

GI number: 218235237

Start: 3921208

End: 3921933

Strand: Reverse

Name: ylmH [H]

Synonym: BCB4264_A3998

Alternate gene names: 218235237

Gene position: 3921933-3921208 (Counterclockwise)

Preceding gene: 218235864

Following gene: 218232897

Centisome position: 72.37

GC content: 35.67

Gene sequence:

>726_bases
GTGGATAAAGTGCTAGAGTGGAAGCGAGCGGCGGAGTACCATCAAGTGAAGTTAACGGATTTTCTTGATCCTAGGCAACA
ACAAATTGTTTCTATGGTAATAGGACAAGGTGATGTTGCTGTGCAATTTGGTGGTGCAACGCCTAATGCAGAGCGTAAAA
GAGCACTTATTTATCCAGACTATCTAGAATTAAATGAAGAAGAATTTCAAGTAGAAGTATTAGAAATTGACTATCCTTCC
AAGTTTTATACGCTAGAACATAGGCAAATATTAGGTACATTTATGTCTCTTGGTTTAACAAGAGAAAAATGTGGTGATAT
TTTGCTGCAAGAAAATCGTGCCCAAATTGTAGTTGCGAAAGAAATTGTATCGTATATTGAGATGAACTTACAATCAATAG
GGAAAGTAAAAGTCTCTTTAGCGTCAGTGCAAGGAGAACAAATTCTACAGATAGATGAAACGTGGGGAGAGAAATCTGGA
ACGGTTTCTTCACTTCGTTTAGATGTTATGTTAGCTGAAATGTTACATTTATCTAGACAGAAAGTACAACCTTTCATAAA
AAATGGTTTAGTAAAAGTCAATTGGAAAACAGTGGAGCAAACTTCTTATGAATGCTATCCAGGAGATGTTTTTTCTGTTA
GAGGATATGGCCGAAGTAAATTATTTTCTGTAGAAGGTAGAACAAAACGCGACAAATGGAGAATTTTGTATGGTATACTA
AAATGA

Upstream 100 bases:

>100_bases
TGCTAAAACTGGTTTGTTCAGTTTATTAAGCTATTTCTTATAGTAAGAAGGTAAATACATGAGCATCTACGAACATTTTA
GGCCTGATGAGGAGGTCTTT

Downstream 100 bases:

>100_bases
TTGGTTTTTTAGAAGGAAATCCTCCTATTTTGTCGAAGAAAAGATATAATTGAAAGAGGAAATTTAGATAACTACTTGGA
GGTGGCGTTGTGCCGTTAAC

Product: S4 domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MDKVLEWKRAAEYHQVKLTDFLDPRQQQIVSMVIGQGDVAVQFGGATPNAERKRALIYPDYLELNEEEFQVEVLEIDYPS
KFYTLEHRQILGTFMSLGLTREKCGDILLQENRAQIVVAKEIVSYIEMNLQSIGKVKVSLASVQGEQILQIDETWGEKSG
TVSSLRLDVMLAEMLHLSRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRILYGIL
K

Sequences:

>Translated_241_residues
MDKVLEWKRAAEYHQVKLTDFLDPRQQQIVSMVIGQGDVAVQFGGATPNAERKRALIYPDYLELNEEEFQVEVLEIDYPS
KFYTLEHRQILGTFMSLGLTREKCGDILLQENRAQIVVAKEIVSYIEMNLQSIGKVKVSLASVQGEQILQIDETWGEKSG
TVSSLRLDVMLAEMLHLSRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRILYGIL
K
>Mature_241_residues
MDKVLEWKRAAEYHQVKLTDFLDPRQQQIVSMVIGQGDVAVQFGGATPNAERKRALIYPDYLELNEEEFQVEVLEIDYPS
KFYTLEHRQILGTFMSLGLTREKCGDILLQENRAQIVVAKEIVSYIEMNLQSIGKVKVSLASVQGEQILQIDETWGEKSG
TVSSLRLDVMLAEMLHLSRQKVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRILYGIL
K

Specific function: Unknown

COG id: COG2302

COG function: function code S; Uncharacterized conserved protein, contains S4-like domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 27698; Mature: 27698

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKVLEWKRAAEYHQVKLTDFLDPRQQQIVSMVIGQGDVAVQFGGATPNAERKRALIYPD
CCCHHHHHHHHHHHEEEEHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCC
YLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQENRAQIVVAK
HHHCCCCCEEEEEEEECCCCCEEEEHHHHHHHHHHHHCCCHHHHCCEEEECCCCEEEEHH
EIVSYIEMNLQSIGKVKVSLASVQGEQILQIDETWGEKSGTVSSLRLDVMLAEMLHLSRQ
HHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHH
KVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRILYGIL
HHHHHHHCCEEEEEEEEEECCCCCCCCCCEEEECCCCCCEEEEECCCCCCCHHEEEEEEC
K
C
>Mature Secondary Structure
MDKVLEWKRAAEYHQVKLTDFLDPRQQQIVSMVIGQGDVAVQFGGATPNAERKRALIYPD
CCCHHHHHHHHHHHEEEEHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCC
YLELNEEEFQVEVLEIDYPSKFYTLEHRQILGTFMSLGLTREKCGDILLQENRAQIVVAK
HHHCCCCCEEEEEEEECCCCCEEEEHHHHHHHHHHHHCCCHHHHCCEEEECCCCEEEEHH
EIVSYIEMNLQSIGKVKVSLASVQGEQILQIDETWGEKSGTVSSLRLDVMLAEMLHLSRQ
HHHHHHHHHHHHHCCEEEEEEECCCCEEEEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHH
KVQPFIKNGLVKVNWKTVEQTSYECYPGDVFSVRGYGRSKLFSVEGRTKRDKWRILYGIL
HHHHHHHCCEEEEEEEEEECCCCCCCCCCEEEECCCCCCEEEEECCCCCCCHHEEEEEEC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045828; 9384377 [H]