Click here to switch to the map view.

The map label for this gene is recU [H]

Identifier: 218235219

GI number: 218235219

Start: 1532707

End: 1533309

Strand: Reverse

Name: recU [H]

Synonym: BCB4264_A1606

Alternate gene names: 218235219

Gene position: 1533309-1532707 (Counterclockwise)

Preceding gene: 218232604

Following gene: 218234736

Centisome position: 28.29

GC content: 33.5

Gene sequence:

>603_bases
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACATGGTTTATTTTTCGTGA

Upstream 100 bases:

>100_bases
TAAGTCATCATACCTTTCATCAAAAAGGTCACATCTTTTTTCATTTTTTGATATAATCACCTTTGTAAGTAATTCTTAGC
AAGTTGGGGGTGGACACACT

Downstream 100 bases:

>100_bases
TAGAGTCATCACTAAGGCTCTTTTTTCGACTTTTGGGGGAGAGAATGAAAGGTAGGAGAAAGTATAATGTCAGATAATTA
TCGTTCTCGTACAGAACGAA

Product: Holliday junction-specific endonuclease

Products: NA

Alternate protein names: Recombination protein U homolog [H]

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDMVYFS

Sequences:

>Translated_200_residues
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDMVYFS
>Mature_199_residues
TIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYFK
QPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQN
TGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDMVYFS

Specific function: Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair

COG id: COG3331

COG function: function code R; Penicillin-binding protein-related factor A, putative recombinase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004612
- InterPro:   IPR011335 [H]

Pfam domain/function: PF03838 RecU [H]

EC number: NA

Molecular weight: Translated: 23356; Mature: 23225

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPL
CEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHCCCCCEEEEEEEEEEECCCCCE
QIVKVDYPARSAAVVKEAYFKQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQI
EEEEECCCCCHHHHHHHHHHCCCCCCCCCCEECCEEEEEECHHCCCCCCCCCCCCHHHHH
EHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQNTGGRKSITKEEIEEHGSLL
HHHHHHHHCCCEEEEEEEEEHHCCEEEECCCEEEEEECCCCCCCCCCCCHHHHHHCCCEE
SCGYHPRIDYIRVLDMVYFS
ECCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPL
EEECCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHCCCCCEEEEEEEEEEECCCCCE
QIVKVDYPARSAAVVKEAYFKQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQI
EEEEECCCCCHHHHHHHHHHCCCCCCCCCCEECCEEEEEECHHCCCCCCCCCCCCHHHHH
EHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQNTGGRKSITKEEIEEHGSLL
HHHHHHHHCCCEEEEEEEEEHHCCEEEECCCEEEEEECCCCCCCCCCCCHHHHHHCCCEE
SCGYHPRIDYIRVLDMVYFS
ECCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA