Click here to switch to the map view.

The map label for this gene is yebA [C]

Identifier: 218235125

GI number: 218235125

Start: 3463736

End: 3465061

Strand: Reverse

Name: yebA [C]

Synonym: BCB4264_A3571

Alternate gene names: 218235125

Gene position: 3465061-3463736 (Counterclockwise)

Preceding gene: 218233898

Following gene: 218235318

Centisome position: 63.94

GC content: 39.52

Gene sequence:

>1326_bases
ATGGCTACAAACAAAGAAACCTATAATCTCGAATCATATAAGAAGAAAATTAAAGCAGGTAAGGAAGAGTATCAAAAAAG
AAAAGAGTACCTTGCTAAATTTGAACTTCCTAAAACTAATGATGAAGAGGAAGAAGAAGTAGAAGCTTCCGATGGTAGTA
AAAAGCCTGAAGACCAAGGAAACGCCGTAAAAGAACCTGAGGGAGGAGTTGGTAACTTCACAGGTTCGGGCGAACTAGGC
GTTCCTGCAGAACCAAAATCATATAGATTCACTTCCGTTATGGGAGCCCGTTGGGGAACAAACCATAATGGAGTGGATTT
AGCTCCAAACACACCTGGCGATACCAACTGCAAGATACTTTCCGCAGGTGATGGAGTTGTTCTGCAAGCTAGAAGTGGGG
TAGGTGGCTTTGGTACTTGGATAGTTATTAAACATAAGGATGACTTATATACGATTTATGGCCATATGCACCCTAGTACA
CTAAAAGTAAAAACCGGAGACACAGTAAAAAGAGGACAGCATATTGCAAATATGGGTATGCAAGGGCAGTCAACGGGTGT
CCATTTACACTTTGAGGTTTGTACAGACTTTAATAATAGAAAAGGGACAACAAAAAATCCTGAAGACTACGTTAATGTTC
GAGGCAGCGCTTCAGCTATTCAAGTAGATTCTATTGCACCTAAGGCTAGCTTCTCAGCAAAAGCAGATGAGAAAGAAGAA
GGTAATGAAAAACCAATGCATGCTCTTTATGAAAATGATGGAGCAGAATTATCGGAAGAAGAAAAACTAATTGATCAGAC
GTACAGAAGTTCTTTCCCATACCTACCAGTTCAATTTATAGGGGATTCTCTTAAGAAGGGTGACATGACAAGAGAGTACT
TTCTCCTTAACCGTGTTGGCTGGGCTCGAACTACCAAGTATGAAAAAATGGTTCCCTTAAATAAGGAAAGATTTATTCAT
AGTGAAAAATACGATGGTCATGAAGGAAATCTTTATTCTCCAGATGCAAAAAGGTTGTTTGAAAGCTTGCTTTTGAAAAC
ACAAAAACCTTATTTTGAGGTTATTAGTGGTTTCCGCTTTAGTAACCCTGGTCAACTTTCACCTCATGAGGCAGGTTGTG
CAATTGATATTCTTGTCAGAAGCATAGACGAAGTAAGAGAAATTGCTGACTGTGCATGGCAATTAGGTGTGAGATCGATC
GCGATTGGTGGAGACTTCGAAAACAATAAAGGGTTCATTCATATAGATATTGCTCCAAAAGGGAAAGACATTAAATATGA
TGGAGTTCCTATCTATGGTGGACCAGGAAAGTGGGTGACTCAATGA

Upstream 100 bases:

>100_bases
AAGTTTGTTCATGTTGATATTGGTCCTGAATCAGCTTGGGGATATGATAATCTACCACTTTATCAAGGGCCAGGTACGTT
AAGGGCGGGTGAGTTTAGTT

Downstream 100 bases:

>100_bases
ATTTCAACAGTCCAATTCACCAATCTATTTACAGTAAAGTAGTTGTACCGTCTTTAAATAGATTACAAGGAACAATTGAA
GGCTATGTGATTCAAGTGGA

Product: M23 peptidase domain protein

Products: NA

Alternate protein names: Peptidase M; Metalloendopeptidase-Like Membrane Protein; M24/M37 Family Peptidase; Metallopeptidase; Secreted Metallopeptidase; M23 Peptidase Domain Protein; Peptidase Family; M23 Peptidase Domain-Containing Protein; Lipoprotein; Zinc Metallopeptidase; M23 Family Peptidase; Metalloendopeptidase; Cell Wall Endopeptidase Family; Exported Peptidase; Prophage Pi2 Protein; Membrane Metalloendopeptidase; LysM Domain/M23 Peptidase Domain Protein; Membrane Associated Metalloendopeptidase; M23 Family Membrane Bound Metalloendopeptidase; Secreted Transglycosylase; Transmembrane Protein; Membrane Peptidase; Secreted Peptidase; Transglycosylase Domain Protein; Peptidase/ Glycoside Hydrolase; Metalloendopeptidase-Like Protein; Zinc Metalloendopeptidase; D-Alanyl-D-Alanine Carboxypeptidase; Lipoprotein NlpD; 1 4-Beta-N-Acetylmuramidase; N-Acetylmuramoyl-L-Alanine Amidase; M23/M37 Familypeptidase; M23 Family Peptidoglycan-Specific Endopeptidase; M23 Family Metalloendopeptidase; M23B Family Peptidase; Beta-1 4-N-Acetylmuramoylhydrolase; Peptidase/ Transglycosylase; Metalloprotease YebA; Phage-Associated Peptidase; Secreted Protein

Number of amino acids: Translated: 441; Mature: 440

Protein sequence:

>441_residues
MATNKETYNLESYKKKIKAGKEEYQKRKEYLAKFELPKTNDEEEEEVEASDGSKKPEDQGNAVKEPEGGVGNFTGSGELG
VPAEPKSYRFTSVMGARWGTNHNGVDLAPNTPGDTNCKILSAGDGVVLQARSGVGGFGTWIVIKHKDDLYTIYGHMHPST
LKVKTGDTVKRGQHIANMGMQGQSTGVHLHFEVCTDFNNRKGTTKNPEDYVNVRGSASAIQVDSIAPKASFSAKADEKEE
GNEKPMHALYENDGAELSEEEKLIDQTYRSSFPYLPVQFIGDSLKKGDMTREYFLLNRVGWARTTKYEKMVPLNKERFIH
SEKYDGHEGNLYSPDAKRLFESLLLKTQKPYFEVISGFRFSNPGQLSPHEAGCAIDILVRSIDEVREIADCAWQLGVRSI
AIGGDFENNKGFIHIDIAPKGKDIKYDGVPIYGGPGKWVTQ

Sequences:

>Translated_441_residues
MATNKETYNLESYKKKIKAGKEEYQKRKEYLAKFELPKTNDEEEEEVEASDGSKKPEDQGNAVKEPEGGVGNFTGSGELG
VPAEPKSYRFTSVMGARWGTNHNGVDLAPNTPGDTNCKILSAGDGVVLQARSGVGGFGTWIVIKHKDDLYTIYGHMHPST
LKVKTGDTVKRGQHIANMGMQGQSTGVHLHFEVCTDFNNRKGTTKNPEDYVNVRGSASAIQVDSIAPKASFSAKADEKEE
GNEKPMHALYENDGAELSEEEKLIDQTYRSSFPYLPVQFIGDSLKKGDMTREYFLLNRVGWARTTKYEKMVPLNKERFIH
SEKYDGHEGNLYSPDAKRLFESLLLKTQKPYFEVISGFRFSNPGQLSPHEAGCAIDILVRSIDEVREIADCAWQLGVRSI
AIGGDFENNKGFIHIDIAPKGKDIKYDGVPIYGGPGKWVTQ
>Mature_440_residues
ATNKETYNLESYKKKIKAGKEEYQKRKEYLAKFELPKTNDEEEEEVEASDGSKKPEDQGNAVKEPEGGVGNFTGSGELGV
PAEPKSYRFTSVMGARWGTNHNGVDLAPNTPGDTNCKILSAGDGVVLQARSGVGGFGTWIVIKHKDDLYTIYGHMHPSTL
KVKTGDTVKRGQHIANMGMQGQSTGVHLHFEVCTDFNNRKGTTKNPEDYVNVRGSASAIQVDSIAPKASFSAKADEKEEG
NEKPMHALYENDGAELSEEEKLIDQTYRSSFPYLPVQFIGDSLKKGDMTREYFLLNRVGWARTTKYEKMVPLNKERFIHS
EKYDGHEGNLYSPDAKRLFESLLLKTQKPYFEVISGFRFSNPGQLSPHEAGCAIDILVRSIDEVREIADCAWQLGVRSIA
IGGDFENNKGFIHIDIAPKGKDIKYDGVPIYGGPGKWVTQ

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081989, Length=96, Percent_Identity=44.7916666666667, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1789099, Length=130, Percent_Identity=35.3846153846154, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.4.24.- [C]

Molecular weight: Translated: 48992; Mature: 48861

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATNKETYNLESYKKKIKAGKEEYQKRKEYLAKFELPKTNDEEEEEVEASDGSKKPEDQG
CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCC
NAVKEPEGGVGNFTGSGELGVPAEPKSYRFTSVMGARWGTNHNGVDLAPNTPGDTNCKIL
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCCCCCCCCCEEECCCCCCCCCEEEE
SAGDGVVLQARSGVGGFGTWIVIKHKDDLYTIYGHMHPSTLKVKTGDTVKRGQHIANMGM
ECCCCEEEEECCCCCCCEEEEEEEECCCEEEEEEECCCCEEEEECCCHHHHCHHHHHCCC
QGQSTGVHLHFEVCTDFNNRKGTTKNPEDYVNVRGSASAIQVDSIAPKASFSAKADEKEE
CCCCCCEEEEEEEECCCCCCCCCCCCCHHHEEECCCCCEEEECCCCCCCCCCCCCCCHHC
GNEKPMHALYENDGAELSEEEKLIDQTYRSSFPYLPVQFIGDSLKKGDMTREYFLLNRVG
CCCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHCCHHHCCCCCHHHHHHHCCC
WARTTKYEKMVPLNKERFIHSEKYDGHEGNLYSPDAKRLFESLLLKTQKPYFEVISGFRF
CHHCCCHHHCCCCCHHHCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCC
SNPGQLSPHEAGCAIDILVRSIDEVREIADCAWQLGVRSIAIGGDFENNKGFIHIDIAPK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEEECCC
GKDIKYDGVPIYGGPGKWVTQ
CCCEEECCEEEECCCCCCCCC
>Mature Secondary Structure 
ATNKETYNLESYKKKIKAGKEEYQKRKEYLAKFELPKTNDEEEEEVEASDGSKKPEDQG
CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCC
NAVKEPEGGVGNFTGSGELGVPAEPKSYRFTSVMGARWGTNHNGVDLAPNTPGDTNCKIL
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCCCCCCCCCEEECCCCCCCCCEEEE
SAGDGVVLQARSGVGGFGTWIVIKHKDDLYTIYGHMHPSTLKVKTGDTVKRGQHIANMGM
ECCCCEEEEECCCCCCCEEEEEEEECCCEEEEEEECCCCEEEEECCCHHHHCHHHHHCCC
QGQSTGVHLHFEVCTDFNNRKGTTKNPEDYVNVRGSASAIQVDSIAPKASFSAKADEKEE
CCCCCCEEEEEEEECCCCCCCCCCCCCHHHEEECCCCCEEEECCCCCCCCCCCCCCCHHC
GNEKPMHALYENDGAELSEEEKLIDQTYRSSFPYLPVQFIGDSLKKGDMTREYFLLNRVG
CCCCCCHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHCCHHHCCCCCHHHHHHHCCC
WARTTKYEKMVPLNKERFIHSEKYDGHEGNLYSPDAKRLFESLLLKTQKPYFEVISGFRF
CHHCCCHHHCCCCCHHHCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCC
SNPGQLSPHEAGCAIDILVRSIDEVREIADCAWQLGVRSIAIGGDFENNKGFIHIDIAPK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCEEEEEECCC
GKDIKYDGVPIYGGPGKWVTQ
CCCEEECCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA